Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq5 140 6e-28 seq6 131 3e-25 seq4 131 3e-25 >seq2 Length=39559433 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || ||||| || ||||| | ||| || || ||||| || || || ||||| |||| Sbjct 31556603 CCACCCCTCAAGCGAAGAACAAGGTGGAGGGTGGATTCCTTTTGAATGTTATAGTCAGCG 31556662 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || |||||||| || ||||||||||| || || ||||| ||||| || Sbjct 31556663 AGTGTCCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGGGGG 31556722 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| ||||| ||||| ||||| || || | ||||| Sbjct 31556723 ATACCCTCCTTGTCCTGGATCTTGGCTTTAACATTGTCAATGGTGTCGGAACTCTCTACA 31556782 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| ||||| ||||| ||||| |||||||| Sbjct 31556783 TCAAGAGTGATAGTCTTGCCAGTCAAAGTCTTGACAAAGATCTGCAT 31556829 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | || || || ||||| |||||||| || ||||| || || || |||| Sbjct 31556375 CCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 31556434 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || ||||| || |||||||||||||| || || || ||||| || || Sbjct 31556435 AATGTGCGTCCATCCTCTAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGATCAGGTGGG 31556494 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || ||||| || || ||||| ||||| |||||| || | || || Sbjct 31556495 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATTGTATCA-GAGCTCTCAAC 31556553 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || |||||||| ||||| | ||||| ||||| |||||||| Sbjct 31556554 CTCAACTGTGATCGTCTTTCCTGTAAGGGTCTTCACAAAGATCTGCAT 31556601 Score = 129 bits (142), Expect = 1e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || || || || ||||| || ||||| || || ||||| | Sbjct 31556147 CCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 31556206 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || || || ||||| || ||||||||||| || || || || || || || Sbjct 31556207 AATGTGCGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 31556266 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || || ||||| || ||||| || || || ||| || | || || Sbjct 31556267 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCGATGGTGTCA-GAGCTCTCCAC 31556325 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 31556326 TTCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 Score = 116 bits (128), Expect = 7e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | || ||||| ||||| ||||| || || || || | | | | || Sbjct 31555931 CGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAGTCTGCCAAGGTACGCCCA 31555990 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || ||||| || || ||||||||||| || || ||||| ||||| || || || ||||| Sbjct 31555991 TCCTCTAGCTGCTTCCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTG 31556050 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGTTAT 82774 || || ||||| || || ||||| || || |||||| || | || ||||| | || || Sbjct 31556051 TCCTGGATCTTGGCCTTAACATTGTCGATGGTATCA-GAGCTCTCGACTTCAAGTGTGAT 31556109 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | ||||| ||||| |||||||| Sbjct 31556110 AGTCTTTCCAGTTAGGGTCTTGACAAAGATCTGCAT 31556145 Score = 111 bits (122), Expect = 3e-19 Identities = 155/216 (72%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || |||| || | || ||| Sbjct 2779604 CGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCG 2779663 Query 82656 TCTTCTAGTTGTTTTCCAGC-AAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || || || |||||| || | || || || || || || || ||||| Sbjct 2779664 TCCTCCAGCTGCTTGCCGGCGAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 2779723 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||| ||||| || || ||||| || || || ||| | || || || | || || Sbjct 2779724 ATCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGAT 2779783 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| |||||||| Sbjct 2779784 AGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT 2779819 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | ||| || ||||| || ||||| || || || || | Sbjct 2778678 TACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 2778737 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || || || ||||| || | || || || || | Sbjct 2778738 CGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGG 2778797 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCT 82760 | || |||||||| || || ||||| || || ||||| || || || ||| || | || Sbjct 2778798 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAG-AGCTCTCA 2778856 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| || || ||||||||||| | ||||| ||||| |||||||| Sbjct 2778857 ACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 2778906 >seq5 Length=31082981 Score = 140 bits (154), Expect = 6e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| |||| | || || | ||| ||||| || |||||||| || || || || | Sbjct 9801595 CCTCCCCTCAGCCTAAGCACAAGGTGTAGAGTGGACTCTTTCTGAATGTTGTAGTCTGCC 9801654 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| || || || || || ||||| ||||| || | ||||||||||| || Sbjct 9801655 AAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGATCTGGGGGG 9801714 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGG-TTCTAC 82762 || || ||||| || || |||||||| || || || || ||||| || | ||| || || Sbjct 9801715 ATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTC-TGAGGACTCAAC 9801773 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||| |||||||| ||||| ||||| ||||||||| Sbjct 9801774 CTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCATT 9801822 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || || || || ||||| || || || |||| Sbjct 26219677 CCTCCCCTGAGGCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 26219618 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | || || || || || || || ||||||||||| || | || || ||||| || Sbjct 26219617 AGGGTCCTGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGA 26219558 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || |||||||| || ||||| ||||| |||||| | || || Sbjct 26219557 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACATTGTCAATGGTATCAGAGGACTCCACC 26219498 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || ||||| ||||| |||||||| ||||| Sbjct 26219497 TCAAGGGTGATAGTCTTTCCGGTCAAGGTCTTGACAAATATTTGCAT 26219451 Score = 111 bits (122), Expect = 3e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||||| ||| ||||| ||||| || || ||||| | || | | || Sbjct 9800931 ACGGAGCACCAGGTGCAAAGTGGATTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGGCC 9800990 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||||||||| || | || ||||| || || || |||||||| Sbjct 9800991 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCCTTCCTT 9801050 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || |||||||||||||| || || |||||||| || | || || |||| || || Sbjct 9801051 GTCCTGAATCTTTGCTTTCACGTTGTCAATCGTGTCTGACGACTCAACCTCCAGGGTAAT 9801110 Query 82775 CGTCTTGCCTGTCA 82788 || ||||| |||| Sbjct 9801111 GGTTTTGCCGGTCA 9801124 Score = 105 bits (116), Expect = 1e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || ||||| || || || |||| ||| | | || ||||| || || Sbjct 26219425 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTGCGGCCATCTTCGAGCTGC 26219366 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || | || || || ||||| ||||| ||||| || || || || Sbjct 26219365 TTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATTTTG 26219306 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || ||||| ||||| | || || || | ||||| |||||||| || Sbjct 26219305 GCCTTGACGTTATCAATGGTATCCGAGGACTCAACCTCAAGGGTTATGGTCTTGCCAGTG 26219246 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 26219245 AGAGTCTTCACGAAGATCTGCAT 26219223 >seq6 Length=34615992 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || || || || ||||| || || ||||| | Sbjct 31537987 CCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCG 31538046 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || |||||||| || ||||||||||| || | ||| || || || || Sbjct 31538047 AGGGTGCGACCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGA 31538106 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || |||||||| || || ||||| ||||| |||||| | || || Sbjct 31538107 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATTGTATCAGACGACTCAACC 31538166 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 31538167 TCGAGGGTGATGGTCTTGCCGGTAAGTGTCTTCACAAAGATCTGCAT 31538213 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||| | ||| || || || || ||||| || || || |||| || | | || || Sbjct 32010365 AGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 32010306 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || ||||||||||| || | || || ||||| || || || ||||| || Sbjct 32010305 TCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 32010246 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||| || || ||||| || ||||| || || || || || | || || ||| Sbjct 32010245 TGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAAGACTCAACCTCAAGTGTGATGGTC 32010186 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||| ||||| || || |||||||| Sbjct 32010185 TTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 32010154 >seq4 Length=33711903 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||||| || || || ||||| || |||||||| | ||| | | || Sbjct 30264497 CGGAGTACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCAAGAGTACGCCCA 30264438 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | || || || ||||| || || ||||| Sbjct 30264437 TCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 30264378 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| ||||||||||| | || || ||||| || || Sbjct 30264377 TCCTGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATG 30264318 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| |||||||||||||| Sbjct 30264317 GTCTTGCCAGTGAGGGTCTTAACAAATATCTGCAT 30264283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827049044068