Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 3e-13 seq6 86.0 4e-12 seq2 86.0 4e-12 seq9 84.2 1e-11 >seq1 Length=46096743 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 12788229 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTC 12788288 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || || | |||||||| || | || | ||||| ||||| Sbjct 12788289 CAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATCCCTTCCTTGTCCTG 12788348 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| | | ||| | |||||| || ||||| || | |||||| || | Sbjct 12788349 GATCTTCGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCT 12788407 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 12788408 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 12788438 >seq6 Length=34615992 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || ||||||||||| | || || | |||| || | || Sbjct 31537783 TGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTCCTACCGTCCTCAAGCTGC 31537842 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || |||||||| || | |||||||||||| | || | || || ||||| || ||| Sbjct 31537843 TTGCCGGCAAAGATGAGACGCTGCTGATCAGGAGGGATTCCCTCCTTGTCCTGGATCTTC 31537902 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 ||| |||| ||| | ||||| || || || |||| ||||| || || ||||| Sbjct 31537903 GCCTTC-ACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGAGTGATGGTCTTTCCTGT 31537961 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 || || || |||||||||||||| Sbjct 31537962 CAAGGTCTTCACAAAGATCTGCAT 31537985 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| ||| || || ||||||||||| | || || || | || || Sbjct 32010591 CACCAAGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTACGGCCATCCTC 32010532 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || || || ||||| |||| ||||||||| || | || | || || ||||| Sbjct 32010531 AAGCTGCTTACCAGCAAATATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 32010472 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| ||| |||| ||| | |||||| || || || |||| ||||| || | Sbjct 32010471 GATCTTCGCCTTC-ACATTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTGATGGTCT 32010413 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || |||||||||||||| Sbjct 32010412 TGCCAGTCAGGGTCTTGACAAAGATCTGCAT 32010382 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || ||| |||||| || ||||||||||| | | ||| ||| | || ||| Sbjct 30154844 ACCAAATGGAGCGTGGACTCTTTCTGAATGTTGTAATCAGCTAATGTACGTCCATCTTCC 30154785 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 | ||||| || || ||||||| | ||||||||| | || | ||| |||||||| Sbjct 30154784 AGCTGTTTCCCTGCGAAAATCAGCCTTTGCTGATCTGGGGGGATACCCTCTTTGTC 30154729 >seq2 Length=39559433 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||| || || |||||||| |||| Sbjct 2778679 ACCACCACGGAGACGAAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC 2778738 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | || || ||||| || |||| ||||||||| || | || Sbjct 2778739 GAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCAGGGGG 2778798 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| || || |||| ||| ||| | |||||| ||| | Sbjct 2778799 GATCCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTGTCGATGGTGTCAGAGCTC---T 2778854 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || ||||| | || || ||||||||||||||| Sbjct 2778855 CAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCATA 2778907 >seq9 Length=26294017 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| ||| || || |||||||| || | ||||||||| | || ||| Sbjct 17860862 ACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAGCCAGTGTGCGTCCATCCTCC 17860803 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || || || || || || ||||||||||| |||||| | || | ||||| ||||| Sbjct 17860802 AACTGCTTGCCAGCGAATATCAAACGCTGTTGATCTGGAGGGATCCCTTCCTTGTC 17860747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703951927040