Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq7 363 5e-96 seq12 223 1e-53 >seq7 Length=31244610 Score = 363 bits (402), Expect = 5e-96 Identities = 376/488 (77%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 20003 ATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTG 20062 ||| | |||||||| || ||||||||||| || ||||| || || |||||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 20063 GCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCG 20122 |||||||||||||| || || ||||||||||| ||||| ||||| | || || || | | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 20123 CTTGTGC-GTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAA 20179 ||| | | || || |||||| | ||| || | || | ||||||| ||||| ||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAA--TCCGCTAATGAGGGTTACAGATTTGGTCAA 14634497 Query 20180 GAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAA 20239 || |||||||| ||||| || || |||||||||||||| ||||| || || ||||||||| Sbjct 14634498 GAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAA 14634557 Query 20240 TACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTA 20299 || ||| ||| ||||| |||||| ||||||||||| | ||||| ||||| || | | Sbjct 14634558 TATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCA 14634617 Query 20300 GGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAAC 20359 |||||||||||| |||| || || || ||| ||||| || || || ||||| ||||| Sbjct 14634618 GGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAAT 14634677 Query 20360 TTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTC 20419 || ||||| || | | || | | | ||||| || ||| ||||||||||||| || || Sbjct 14634678 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATC 14634737 Query 20420 AATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTT 20479 || ||||||||||| || | || || ||||| ||||| |||||||| |||||||| || Sbjct 14634738 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 14634797 Query 20480 GACCTTGC 20487 ||||| || Sbjct 14634798 GACCTAGC 14634805 >seq12 Length=27944835 Score = 223 bits (246), Expect = 1e-53 Identities = 243/323 (75%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 20165 TACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGA 20224 |||| ||| | ||||| |||||||| ||||| || | ||||||||||||| ||||| Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 20225 CGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCT 20284 || || ||||||||||| ||| ||| ||||| |||||| ||||||||||| | ||| Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 20285 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 20344 || ||||| || | ||||||||||||| |||| || || || ||| ||| | || || Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 20345 CTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACT 20404 || ||||| ||||| || ||||| || | | || ||| | ||||| || || |||| Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 20405 TGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCT 20464 |||||||| || |||||||||||||||| || | || || ||||| |||| |||||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 20465 CATAACTTCCCACTTGACCTTGC 20487 || | || | || ||||| || Sbjct 3609948 CACAGTTTTTCTCTAGACCTAGC 3609970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828778791896