Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq7 334 2e-87 seq12 221 4e-53 >seq7 Length=31244610 Score = 334 bits (370), Expect = 2e-87 Identities = 368/487 (76%), Gaps = 2/487 (0%) Strand=Plus/Plus Query 29131 ATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTT 29190 ||| | || ||||| || ||||||||||| || ||||| || || |||||| | || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 29191 GCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCG 29250 ||||| || ||||| || || ||||| ||||| ||||| ||||| | || || || | | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 29251 CTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGA 29309 ||| | | || || |||||| || || || | ||||||| ||||| ||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 29310 AGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATA 29369 |||||||||||||| || || |||||||| ||||| ||||| || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 29370 TGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGG 29429 |||| ||| || || |||||| ||||||||||| | ||||| ||||| || | ||| Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 29430 GATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTT 29489 |||||||||| |||| || || || ||| ||||| || || || ||||| || || || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 29490 TAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAA 29549 ||||| || | | || | | | ||||| || |||||||||||||||||| | |||| Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 29550 TCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 || ||||| || || | ||||||||||| || ||||||||||| |||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 29610 TCTGGCT 29616 || ||| Sbjct 14634800 CCTAGCT 14634806 >seq12 Length=27944835 Score = 221 bits (244), Expect = 4e-53 Identities = 230/302 (76%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 29293 TACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGA 29352 |||| ||| | ||||| |||||||||||||| || | ||||||| ||||| ||||| Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 29353 CGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCT 29412 || || ||||||||||||||| ||| || || |||||| ||||||||||| | ||| Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 29413 GCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAAT 29472 || ||||| || | ||||||||||||| |||| || || || ||| ||| | || || Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 29473 CTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACT 29532 || ||||| || || || ||||| || | | || ||| | ||||| || ||||||| Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 29533 TGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCT 29592 ||||||||| | ||||||| ||||| || || | ||||||||||| || | ||||||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 29593 CA 29594 || Sbjct 3609948 CA 3609949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665579100152