Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1 572 2e-158 seq7 318 7e-82 seq12 181 1e-40 seq9 116 4e-21 >seq1 Length=46096743 Score = 572 bits (634), Expect = 2e-158 Identities = 740/1015 (73%), Gaps = 5/1015 (0%) Strand=Plus/Minus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | |||| |||||| ||| | |||| || ||||| ||| | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | ||| |||| ||||||| | || | || |||||| |||| || || |||||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTC 159558 | || |||||| ||||| || | || |||||||| | |||||| ||||| | Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 159559 ACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 159618 || || || || || || ||||| || | | | || ||| | | ||||| ||||| Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 45923281 Query 159619 CCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTT 159678 || || | ||||| || || || ||||| ||| | || || | ||| | |||||| Sbjct 45923280 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 45923221 Query 159679 GCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG- 159737 |||||||| || || || || || |||||||| ||| |||| ||||||||| ||||||| Sbjct 45923220 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 45923161 Query 159738 TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGT 159797 ||| ||| | || ||||| ||||| ||| | |||||||| || || ||||||||||| Sbjct 45923160 TCT-GTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGT 45923102 Query 159798 CAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGG 159857 | ||||||| || ||||||||||| || || ||||||||| | || ||||| || Sbjct 45923101 TTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGG 45923042 Query 159858 GGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAA 159917 |||||||| || ||| ||||| | | ||| | || || || || || ||||| | || Sbjct 45923041 CGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 45922982 Query 159918 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCA 159977 ||| || ||||||||||||||||| | || |||||| || ||| | || || || || Sbjct 45922981 CCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCA 45922922 Query 159978 TGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGC 160037 ||| || ||||| || ||||| | ||||| || || || ||||| || || || Sbjct 45922921 TGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGC 45922862 Query 160038 GTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 160097 ||| | || ||||||| ||||| |||||||| |||||||| | || ||||| ||||| Sbjct 45922861 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTC 45922802 Query 160098 GCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160157 || ||||| |||||||| ||||| || || || ||| | ||||| || ||| | ||||| Sbjct 45922801 CCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGT 45922742 Query 160158 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCG 160217 || || | ||| |||||| |||||||| | | || || ||| | ||||| || Sbjct 45922741 ACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACG 45922682 Query 160218 TGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAG-ACCT 160276 ||| || || ||||| ||||| || | ||||| ||||||||||||||||| || | Sbjct 45922681 TGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTT 45922622 Query 160277 TCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATC 160336 |||||||||| || || || || || || || ||||||| ||||||||| || |||| Sbjct 45922621 TCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 45922562 Query 160337 AACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 | || |||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 45922561 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 342 bits (378), Expect = 6e-89 Identities = 365/482 (76%), Gaps = 0/482 (0%) Strand=Plus/Minus Query 159886 TTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGT 159945 ||| | || || || || || ||||| | ||||| || ||||||||||||||||| || Sbjct 13891746 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 13891687 Query 159946 ATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTT 160005 || |||| | ||| ||| | || || |||||||| ||||| ||||| ||||| | || Sbjct 13891686 GTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATTC 13891627 Query 160006 GAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACT 160065 |||||||| || ||||| || || || ||| | || ||||||| ||||| ||| Sbjct 13891626 GAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACT 13891567 Query 160066 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAAC 160125 ||||| ||||||||||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 13891566 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 13891507 Query 160126 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCT 160185 || || ||| | ||||| || ||| | ||||| || || | ||| |||||| || Sbjct 13891506 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 13891447 Query 160186 ATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATT 160245 |||||| | |||| || ||| | ||||| ||||| || || ||||| ||||| || Sbjct 13891446 ATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 13891387 Query 160246 AGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAA 160305 | ||||| |||||||||||||||||||| ||||||||||| || || || || || || Sbjct 13891386 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 13891327 Query 160306 GGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAG 160365 || ||||||| ||||||||| || ||||| || |||||||| |||| ||||||||| Sbjct 13891326 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 13891267 Query 160366 GA 160367 || Sbjct 13891266 GA 13891265 Score = 212 bits (234), Expect = 7e-50 Identities = 239/320 (75%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 159805 TTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCA 159864 || || || ||||||||||| || || |||||||||||||| ||||| || |||||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 159865 GCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTC 159924 || || ||| ||||| | | ||| | || || || || || ||||| | ||||| || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 159925 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCT 159984 ||||||||||||||||| || || |||| | || ||| | || || || ||||| || Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 159985 ACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAG 160044 || || || ||||| | ||||| ||||| || ||||| || || || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 160045 CCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 160104 || ||||||| ||||| |||||||| |||||||| || || ||||| ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 160105 TTCGGTGTTGCATTTTCTAA 160124 || |||||||| ||||| || Sbjct 15262456 TTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 318 bits (352), Expect = 7e-82 Identities = 366/490 (75%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 158174 ATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTT 158233 ||| |||||||||| |||||||| |||||||||||||| || || || ||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 158234 GCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCA 158293 ||||| |||||||| || || || ||| |||||||||||| | || || || | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 158294 CTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGA 158352 | | || | ||||| ||||||| || || || | ||||| | || |||||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 158353 AGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATA 158412 |||||||| || || || || || || ||||| || || || || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 158413 CGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 158472 ||| || |||||||| ||||| || ||||||||| | ||||| |||||||| | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 158473 CATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTT 158532 || |||||||| || | || | || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 158533 CAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAA 158592 |||||| || | ||||| | || ||||| || | || || ||||| ||| | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 158593 CCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGA 158652 ||| ||| ||||||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 158653 TCTTGCTGCT 158662 || |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 181 bits (200), Expect = 1e-40 Identities = 229/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 158346 GTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCT 158405 ||||||| |||||||| || || || | | || ||||| || || || || || |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 158406 TCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTG 158465 ||||||| ||| || |||||||| ||||| || ||||||||| | ||||| ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 158466 TTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTT 158525 | | || || |||||||| || | || | || ||| | |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 158526 TCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATG 158585 |||| || ||||| || | ||||| || ||||| || | || |||||||| ||| Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 158586 TACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 158645 | | || || ||| ||||||||||||||| ||||| || | ||| || |||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 158646 CACTGGATCTTGCTG 158660 | || || || |||| Sbjct 3609958 CTCTAGACCTAGCTG 3609972 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 160215 TCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGAC 160274 || ||| || || ||||| ||||| || | ||| | |||||||||||||||||||| Sbjct 26735462 TCCTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGAC 26735521 Query 160275 CTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGA 160334 ||||||||||| || || || || || || || |||||| ||||||||| || || Sbjct 26735522 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGTGTGGATGGCAGCTCAGGA 26735581 Query 160335 TCAACC 160340 ||| || Sbjct 26735582 TCAGCC 26735587 >seq9 Length=26294017 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 159835 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAG 159894 ||||||||||| || ||||| || |||||||| || ||| ||||| | | ||| | || Sbjct 19895497 TGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAA 19895438 Query 159895 GGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 159954 || || || || ||||| | ||||| || ||||||||||||||||| || || |||| Sbjct 19895437 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 19895378 Query 159955 GGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGA 160014 | || ||| | || || || ||||| || || || || ||||| | ||||| || || Sbjct 19895377 GCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGT 19895318 Query 160015 GA 160016 || Sbjct 19895317 GA 19895316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573023914046400