Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1 522 3e-143 seq7 345 5e-90 seq12 226 3e-54 seq9 123 3e-23 seq2 113 5e-20 >seq1 Length=46096743 Score = 522 bits (578), Expect = 3e-143 Identities = 733/1021 (72%), Gaps = 7/1021 (1%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | ||||||||| ||| | | || ||||| |||||| | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGT-GCAAACTTTCT 161866 | ||| |||||||||||||| | || ||||||||| | || ||| |||| ||||| Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 45923343 Query 161867 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 161925 || | ||| ||||| ||| || || | | | | || ||| | | || || |||| Sbjct 45923342 TAACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 45923283 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 | || || || ||||||||||| || ||| ||| | || || || |||| ||||| Sbjct 45923282 GCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 45923223 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | || |||||||| || || || ||||| || |||||| | ||||| |||||||| || | Sbjct 45923222 TTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 45923163 Query 162046 GTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 162105 | | || | || || || ||||| ||| | |||||||| || || |||||||||| Sbjct 45923162 GGTCTGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTG 45923103 Query 162106 TCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 162165 | | | ||||| || || ||| |||| || ||| ||||||| || | ||| |||| Sbjct 45923102 TTTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTG 45923043 Query 162166 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGA 162225 | || ||||| || ||| ||||| | | || | |||||||| ||||| ||||| ||| Sbjct 45923042 GCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGA 45922983 Query 162226 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||| || ||||||||||||||||| | || |||||| || || |||| ||||||| Sbjct 45922982 ACCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTC 45922923 Query 162286 ACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 162345 | || | || || ||||| || ||| ||||| || || ||||| ||||| | Sbjct 45922922 ATGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCG 45922863 Query 162346 CGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 162405 | ||| | | || || | ||||| |||||||| |||||||| | || ||||| |||| Sbjct 45922862 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGT 45922803 Query 162406 CGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 162465 | || ||||| ||| |||| ||||| || || || ||| | ||||| || ||| | |||| Sbjct 45922802 CCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTG 45922743 Query 162466 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTC 162525 | || || | ||| |||||| |||||||| | | || || ||||| ||||| | Sbjct 45922742 TACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTAC 45922683 Query 162526 GTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGA-AACG 162584 |||| || || ||||| ||||| ||| | ||||| |||||||||| ||||| || Sbjct 45922682 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACT 45922623 Query 162585 TTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGAC 162644 |||||||| || || ||||| | || || || | ||||| ||| | ||| || || Sbjct 45922622 TTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 45922563 Query 162645 CAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAA 162704 || || ||||| || |||| ||||| || || ||||| || | || ||||| |||||| Sbjct 45922562 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 45922503 Query 162705 T 162705 | Sbjct 45922502 T 45922502 Score = 298 bits (330), Expect = 6e-76 Identities = 374/512 (73%), Gaps = 7/512 (1%) Strand=Plus/Minus Query 162195 TTTCTTC-AAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGG 162253 ||||||| ||||||| ||||| ||||| ||||||| || ||||||||||||||||| || Sbjct 13891747 TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGG 13891688 Query 162254 TATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATA 162313 || |||| | ||| || |||| ||||| || || | || || ||||| || ||| Sbjct 13891687 AGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATT 13891628 Query 162314 CGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGAC 162373 ||| ||||| || ||||| ||||| || ||| | | || || | ||||| || Sbjct 13891627 CGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAAC 13891568 Query 162374 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAA 162433 |||||| ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| || Sbjct 13891567 TTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAA 13891508 Query 162434 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTC 162493 || || ||| | ||||| || ||| | ||||| || || | ||| |||||| | Sbjct 13891507 TAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGC 13891448 Query 162494 TATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGAT 162553 ||||||| | |||| || ||||| ||||| ||||| || || ||||| ||||| || Sbjct 13891447 TATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 13891388 Query 162554 CAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGA 162613 | | ||||| ||||||||||| ||||| || |||||||| || || ||||| | || || Sbjct 13891387 CCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGA 13891328 Query 162614 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGA 162673 || | ||||| ||| | ||| || || || || ||||| || |||| ||||| || Sbjct 13891327 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 13891268 Query 162674 AGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || || | |||||||| ||||||| Sbjct 13891267 GGA------GCCACGTGGCAACGCTCTTTAAT 13891242 Score = 199 bits (220), Expect = 4e-46 Identities = 236/320 (74%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 162114 TTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCA 162173 || || || || ||| |||| || ||| ||||||| || || ||| ||||| || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 162174 GCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTC 162233 || || ||| ||||| | | || | |||||||| ||||| ||||| ||||||| || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 162234 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTC 162293 ||||||||||||||||| || || |||| | || || |||| |||||||| || | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 162294 ACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGAT 162353 || |||||||| || ||| |||||||| || ||||| ||||| || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 162354 TCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 162413 | || || | ||||| |||||||| |||||||| || || ||||| ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 162414 TTCGGTATTGCGTTTTCTAA 162433 || ||| |||| ||||| || Sbjct 15262456 TTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 345 bits (382), Expect = 5e-90 Identities = 372/490 (76%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 160458 ATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTT 160517 ||| |||||||||| |||||||| || |||||||||||||| || |||||| | || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 160518 GCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCA 160577 ||||| |||||||| || || | ||| ||||||||| || | || || || | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 160578 CTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGA 160636 | | || | ||||| ||||||| || || || | ||||| | || |||||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 160637 GGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATA 160696 ||||||||| || || || || || || |||||||| || || || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 160697 TGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGG 160756 ||| || |||||||| ||||| | ||||||||| |||| || |||||||||| || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 160757 AATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTT 160816 || |||||||||||| | ||| |||| || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 160817 CAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAA 160876 |||||| || | | ||| | |||||||| || | || || ||||| || | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 160877 TCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 160936 |||||| ||||||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 160937 CCTCGCTGCT 160946 ||| |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 226 bits (250), Expect = 3e-54 Identities = 239/315 (76%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 160630 GTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCT 160689 |||||||||||||||| || || || | | || |||||||| || || || || |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 160690 TCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTG 160749 |||||||||| || |||||||| ||||| | ||||||||| |||| || ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 160750 TAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTT 160809 ||| || || |||||||||||| | ||| |||| || ||| | |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 160810 TCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACG 160869 |||| || ||||| || | | ||| |||||||| || | || |||||||| || Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 160870 TACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCC 160929 | | ||||||||| ||||||||||||||| ||||| || | ||| || |||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 160930 CACTCGACCTCGCTG 160944 | || ||||| |||| Sbjct 3609958 CTCTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 162130 TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCC 162189 |||| || ||| ||||||| || || ||| ||||| || ||||| || ||| ||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 162190 TGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTG 162249 | | || | |||||||| ||||| ||||| ||||||| || |||||||||||||||| Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 162250 CTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACAT 162309 | || || |||| | || || |||| |||||||| || | || || ||||| || Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 162310 TATACGAGGATGGAGA 162325 ||| ||||| || || Sbjct 19895331 TATTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 113 bits (124), Expect = 5e-20 Identities = 185/262 (71%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 |||||||| | || |||||| | | | |||| | ||| |||||| || || ||| | Sbjct 19905520 TTTGACATTATGGATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGA-TGATCTAGC 19905578 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 19905579 GTTTTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 19905638 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| |||||||||||||| | || ||||||||| | | ||| ||||| ||||| Sbjct 19905639 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 19905696 Query 161867 T-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 161925 | || || ||||| ||| || || | | | | || ||| | | || || |||| Sbjct 19905697 TAACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 19905756 Query 161926 GTCCTGAGGCTCAAGGGGATTT 161947 | || || || ||||||||||| Sbjct 19905757 GCCCAGAAGCACAAGGGGATTT 19905778 Score = 109 bits (120), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | ||||||||| | | | || ||||| |||||||| || |||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGT 161855 | ||| |||||||||||||| | || ||||||||| | || ||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559503916074400