Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1 421 1e-112 seq7 300 2e-76 seq12 167 3e-36 seq9 104 3e-17 seq2 93.3 6e-14 >seq1 Length=46096743 Score = 421 bits (466), Expect = 1e-112 Identities = 701/1009 (69%), Gaps = 3/1009 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| || ||||| | ||| | ||| | || |||||||| | Sbjct 45923516 TGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCT 45923459 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | ||| |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 45923458 ATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGT 45923399 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || |||||| |||||||| | || ||||||| | || ||| || || | || Sbjct 45923398 AACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAAC 45923339 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 ||||| || || || ||||| || | | | || ||| | | ||||| ||||| || Sbjct 45923338 CGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCC 45923279 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || || || || ||| ||| | || || || ||| | |||||||| Sbjct 45923278 GGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGC 45923219 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 |||||| || || || || || || || |||||| | ||||| |||||||| || | Sbjct 45923218 TCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTC 45923159 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 || | || || || || || ||| ||||| ||| || |||||||| ||||| Sbjct 45923158 TGTTCAATTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTC 45923099 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 | || || | || ||||| || ||||| ||||||||| | || ||||| || Sbjct 45923098 CTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGT 45923039 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 ||||| || ||| ||||| | | || | || || || || || ||||| ||||||| Sbjct 45923038 AGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCC 45922979 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || ||||||||||||||||| | || |||||| || || |||| || || ||||| Sbjct 45922978 ATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGG 45922919 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | ||||| ||||| || |||| ||| || || || || |||||| || || Sbjct 45922918 GGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTT 45922859 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || | ||||| || ||||| ||||| || | || ||||| ||||| || Sbjct 45922858 TAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCA 45922799 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 |||||| || ||||| ||| ||||| |||||| | || ||||||||| | ||||| || Sbjct 45922798 AATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACC 45922739 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 |||| ||| | ||| | ||||||| | | || || ||||| || || ||||| Sbjct 45922738 GGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGC 45922679 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGA-AACTTTCT 176751 ||||| || || ||| || || | ||||| |||||||||| ||||| ||||||| Sbjct 45922678 CTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCT 45922619 Query 176752 ACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAAC 176811 |||| || || || ||| | ||||| || | | || ||||||||| || |||||| | Sbjct 45922618 ACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGC 45922559 Query 176812 CACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | ||||| || ||||||| || || |||||||| | || ||||| Sbjct 45922558 CTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 45922510 Score = 277 bits (306), Expect = 3e-69 Identities = 352/483 (73%), Gaps = 1/483 (0%) Strand=Plus/Minus Query 176358 TTTCTTC-AGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGG 176416 ||||||| | || || || || ||||| ||||||| || ||||||||||||||||| || Sbjct 13891747 TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGG 13891688 Query 176417 TATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATA 176476 || |||| | ||| || |||| || |||||||| | ||| || ||||| || |||| Sbjct 13891687 AGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATT 13891628 Query 176477 TGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGAC 176536 |||||||| || || |||||| || || | | || || | ||||| || Sbjct 13891627 CGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAAC 13891568 Query 176537 CTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAA 176596 ||||| ||||| ||||| |||||||| ||||| |||||||| || ||||| ||| || Sbjct 13891567 TTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAA 13891508 Query 176597 TAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAG 176656 ||| |||||| | || ||||||||| | ||||| || |||| ||| | ||| | Sbjct 13891507 TAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGC 13891448 Query 176657 TATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGAT 176716 ||||||| | |||| || ||||| || || ||||| ||||| || || ||| || || Sbjct 13891447 TATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAAT 13891388 Query 176717 TAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGA 176776 | ||||| ||||||||||| ||||| ||||||||||| || || || ||| | ||||| Sbjct 13891387 CCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGA 13891328 Query 176777 AGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGA 176836 || | | || ||||||||| || |||||| || ||||| || ||||||| || Sbjct 13891327 GGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGA 13891268 Query 176837 AGA 176839 || Sbjct 13891267 GGA 13891265 Score = 156 bits (172), Expect = 6e-33 Identities = 218/306 (71%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 176286 TACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTT 176345 || ||||| || ||||| ||||||||||| || ||||| || ||||| || ||| Sbjct 15262747 TATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGCGATATTT 15262688 Query 176346 AGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATG 176405 ||||| | | || | || || || || || ||||| ||||||| || ||||||||| Sbjct 15262687 CGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATG 15262628 Query 176406 GGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAA 176465 |||||||| || || |||| | || || |||| || || ||||| | || |||||| Sbjct 15262627 GGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTTGAA 15262568 Query 176466 AATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAG 176525 || || |||| ||| ||||| || || |||||| || || | | || || Sbjct 15262567 AACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAA 15262508 Query 176526 GAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTT 176585 | ||||| || ||||| ||||| || || || ||||| ||||| |||||||| || ||| Sbjct 15262507 GCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTT 15262448 Query 176586 GCGTTT 176591 || ||| Sbjct 15262447 GCTTTT 15262442 >seq7 Length=31244610 Score = 300 bits (332), Expect = 2e-76 Identities = 354/479 (74%), Gaps = 0/479 (0%) Strand=Plus/Plus Query 174966 ATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTC 175025 ||| | || ||||| ||||||||||||||| | ||||| || || |||||||| || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 175026 GCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCA 175085 || ||||| ||||| ||||| | ||| || ||||||||||| | || |||||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 175086 CTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAA 175145 | || | || || ||||||| || || || | ||||||| || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 175146 GAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATAC 175205 |||||||| ||||| || ||||| || ||||| || || || || || ||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 175206 GCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGT 175265 ||| || |||||||| || || | ||||||||||| || || ||||| || | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 175266 ATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTC 175325 || |||||||| || | ||| || || ||||| |||||||| || || ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 175326 AACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAAC 175385 ||||| ||||| | || | |||||| | || | || || ||||| ||| | | ||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 175386 AGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 | ||| |||||| |||||||||||||| || | ||||| ||||||||||| ||||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 >seq12 Length=27944835 Score = 167 bits (184), Expect = 3e-36 Identities = 220/305 (72%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 175140 CAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTC 175199 ||||| |||||||| ||||| || || | || ||||| || || || || || |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 175200 CAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTT 175259 ||||| ||| || |||||||| || || | ||||||||||| || || ||||| || Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 175260 GTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTC 175319 | || || |||||||| || | ||| || || ||| | |||||||| || || ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 175320 AACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTT 175379 || || ||||| ||||| | || |||||| | || | || |||||||| ||| | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 175380 CTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCA 175439 | || | ||| |||||| |||||||||||||| || ||||| |||| || | Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 175440 CTAGA 175444 ||||| Sbjct 3609960 CTAGA 3609964 >seq9 Length=26294017 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 176307 TGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAG 176366 ||||||||||| || ||||| || ||||| || ||| ||||| | | || | || Sbjct 19895497 TGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAA 19895438 Query 176367 GGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 176426 || || || || ||||| ||||||| || ||||||||||||||||| || || |||| Sbjct 19895437 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 19895378 Query 176427 GGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGA 176486 | || || |||| || || ||||| | || || ||||| || |||| ||| || || Sbjct 19895377 GCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACGGT 19895318 Query 176487 GA 176488 || Sbjct 19895317 GA 19895316 >seq2 Length=39559433 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | ||||| | ||| | ||| | || |||||||| | Sbjct 8166108 TGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCT 8166049 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | ||| |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 8166048 ATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGT 8165989 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGT 176018 || |||||| |||||||| | || ||||||| | || ||| Sbjct 8165988 AACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729929490510560