Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1 471 5e-128 seq7 322 6e-83 seq12 158 1e-33 seq9 105 8e-18 seq2 100 3e-16 >seq1 Length=46096743 Score = 471 bits (522), Expect = 5e-128 Identities = 712/1003 (71%), Gaps = 7/1003 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| ||| | | || || ||||| ||| | || |||||||| || | ||| Sbjct 45923508 TGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTT 45923451 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 45923450 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 45923391 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTA-CGGCAGCT 179411 |||| ||||| || | || ||||||||| | || ||| || ||||||| | || || Sbjct 45923390 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCGGCA 45923332 Query 179412 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 179471 || || || ||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 45923331 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 45923272 Query 179472 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 179531 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 45923271 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 45923212 Query 179532 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 179590 || || || || || || ||||||||| | | ||||||||||||||||| ||| | Sbjct 45923211 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 45923152 Query 179591 TATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTT 179650 | | | ||||| ||||| ||| | || ||||| || || ||||| || || | || Sbjct 45923151 TTGCGG-CCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATT 45923093 Query 179651 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 ||| || ||||| ||||||| ||| |||||| || ||||| ||||| || || || Sbjct 45923092 CCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGC 45923033 Query 179711 GATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCA 179770 ||| || | ||| | || ||| | || || || || || |||||| | ||||| || || Sbjct 45923032 GATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCA 45922973 Query 179771 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTAC 179830 ||||||||||||||| | || |||| | || ||||| | ||||| ||||| | || Sbjct 45922972 TATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAAC 45922913 Query 179831 TGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTC 179890 ||| || || || | | ||| || || || ||||||||||| || ||| | | Sbjct 45922912 TGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCC 45922853 Query 179891 GACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 179950 || || | ||||| |||||||| |||||||| | || ||||| ||||| || ||||| Sbjct 45922852 AACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCTT 45922793 Query 179951 CGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 180010 ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 45922792 TGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCAC 45922733 Query 180011 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 180070 ||| |||||| |||||||| | | || || ||||| ||||| ||||| || || Sbjct 45922732 CGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATGA 45922673 Query 180071 TTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAG-ACCTTCTACACCA 180129 ||||| ||||| ||| | ||||| ||||||| || |||||| || |||||||||| Sbjct 45922672 CTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACCA 45922613 Query 180130 AGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATG 180189 | || |||||| | || || || | ||||| ||| ||||| | ||||| || |||| Sbjct 45922612 AAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATG 45922553 Query 180190 AGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 | | ||||||| || || ||||| ||| | || || || Sbjct 45922552 AAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 45922510 Score = 297 bits (328), Expect = 2e-75 Identities = 344/464 (74%), Gaps = 0/464 (0%) Strand=Plus/Minus Query 179727 CTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCT 179786 || ||| | || || || || || |||||| | ||||| || ||||||||||||||||| Sbjct 13891749 CTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 13891690 Query 179787 GGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTG 179846 || || |||| | ||| ||||| | ||||||||||| | ||| ||||| || || | Sbjct 13891689 GGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTA 13891630 Query 179847 TATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 179906 | |||||||| || ||||||||||| || ||| | | || || | ||||| Sbjct 13891629 TTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAA 13891570 Query 179907 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCT 179966 |||||||| ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| Sbjct 13891569 ACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCC 13891510 Query 179967 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 180026 || || || ||| | ||||| || ||| | ||||| || || | ||| |||||| Sbjct 13891509 AATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGT 13891450 Query 180027 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAG 180086 |||||||| | |||| || ||||| ||||| ||||| || || ||||| ||||| Sbjct 13891449 GCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAA 13891390 Query 180087 ATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAAT 180146 ||| | ||||| |||||||| || |||||||| ||||||||||| || |||||| | || Sbjct 13891389 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAAC 13891330 Query 180147 GAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGA 180190 || || | ||||| ||| ||||| | ||||| || ||||| Sbjct 13891329 GAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 13891286 Score = 179 bits (198), Expect = 4e-40 Identities = 233/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 179647 TTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCG 179706 |||| || || ||||| ||||||| ||| |||||| || || ||| ||||| || | Sbjct 15262758 TTTTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 15262699 Query 179707 CGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCT 179766 | ||||| || | ||| | || ||| | || || || || || |||||| | ||||| | Sbjct 15262698 CAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 15262639 Query 179767 TCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAG 179826 | ||||||||||||||||| || || |||| | || ||||| | ||||| ||||| | Sbjct 15262638 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGG 15262579 Query 179827 TTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTG 179886 || || || || || | | ||| ||||| || ||||||||||| || ||| Sbjct 15262578 CAACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTA 15262519 Query 179887 ATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGA 179946 | | || || | ||||| |||||||| |||||||| || || ||||| ||||| || | Sbjct 15262518 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAA 15262459 Query 179947 TCTTCGGTATTGCATTTTCTAA 179968 |||| ||| |||| ||||| || Sbjct 15262458 TCTTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 322 bits (356), Expect = 6e-83 Identities = 364/488 (75%), Gaps = 0/488 (0%) Strand=Plus/Plus Query 178347 ATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTC 178406 ||| |||| ||||| |||||||| ||||| || ||||| || || |||||||| ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 178407 GCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCA 178466 || ||||||||||| ||||| || |||||||| ||||| ||||| ||||| || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 178467 CTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAA 178526 | | | ||||| ||||||| ||||| || | ||||| | || || ||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 178527 GAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATAT 178586 |||||||| || || || || || || ||||| || || || || || |||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 178587 GCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGA 178646 ||| || |||||||| ||||| | ||||||||| | || || |||||||||| || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 178647 ATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTC 178706 || |||||||| || | || | || || ||||| || ||||| || |||||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 178707 AACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAAC 178766 ||||| || | | || | ||||| || || | || || ||||| || | ||||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 178767 CGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGAT 178826 ||||| ||| || |||||||| |||||||| || || || ||||||||||| || || Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 178827 CTTGCAGC 178834 || || || Sbjct 14634801 CTAGCTGC 14634808 >seq12 Length=27944835 Score = 158 bits (174), Expect = 1e-33 Identities = 210/292 (72%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 178521 CAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTC 178580 ||||| |||||||| || || || | | || ||||| || || || || || |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 178581 CAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTA 178640 ||||||||| || |||||||| ||||| | ||||||||| | || || ||||||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 178641 GTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTC 178700 | || || |||||||| || | || | || || ||| | || ||||| || |||||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 178701 AACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTG 178760 || || ||||| || | | || ||||| || || | || || ||||| || | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 178761 CTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACA 178812 |||| ||||| ||| || |||||||| |||||||| | || || |||| Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACA 3609951 >seq9 Length=26294017 Score = 105 bits (116), Expect = 8e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 179665 TGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCT 179724 ||||||| ||| |||||| || |||||| ||||| || || ||||| || | ||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 179725 TGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTG 179784 | || ||| | || || || || || |||||| | ||||| || |||||||||||||||| Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 179785 CTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACAT 179844 | || || |||| | || ||||| | ||||| ||||| | || || || || || Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 179845 TGTATGAAGATGGAGA 179860 | | ||| || || || Sbjct 19895331 TATTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| | | | || || ||||| ||||| || |||||||| || | ||| Sbjct 8166100 TGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 8166041 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 8166040 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 8165981 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGT 179390 |||| ||||| || | || ||||||||| | || ||| Sbjct 8165980 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606009509098560