Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1 517 1e-141 seq7 327 1e-84 seq12 187 3e-42 seq9 123 3e-23 seq2 116 4e-21 >seq1 Length=46096743 Score = 517 bits (572), Expect = 1e-141 Identities = 734/1022 (72%), Gaps = 9/1022 (1%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||||| ||| | | || ||||| |||||| | || |||||||| Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT-GCAAACTTTCT 160077 | ||| ||||||||||||||| | || ||||||||| | || ||| |||| ||||| Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 45923343 Query 160078 TA-CAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 160136 || | ||| ||||| ||| || || | | | | || ||| | | || || |||| Sbjct 45923342 TAACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 45923283 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 | || || || ||||||||||| | ||| ||| | || || || |||| ||||| Sbjct 45923282 GCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 45923223 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | || |||||||| || || || ||||| || |||||| | ||||| |||||||| || | Sbjct 45923222 TTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 45923163 Query 160257 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTT 160315 | ||| || | | || ||||| ||||| ||| | |||||||| || || ||||| ||| Sbjct 45923162 GGTCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTT 45923104 Query 160316 GTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 160375 || | ||||||| || || ||| |||| || ||| ||||||| || | ||| ||| Sbjct 45923103 GTTTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTT 45923044 Query 160376 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTT 160435 || || ||||| || ||| ||||| | | ||| | ||||||||||| || |||||| | Sbjct 45923043 GGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTG 45922984 Query 160436 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATC 160495 ||||| || ||||||||||||||||| | || |||| | || ||||| | || || Sbjct 45922983 AACCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATT 45922924 Query 160496 CATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAG 160555 ||||| | ||||| || ||||| || | ||| || || || ||||||||||| Sbjct 45922923 CATGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC 45922864 Query 160556 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160615 || ||| | | || || | ||||| |||||||| |||||||| | || ||||| ||| Sbjct 45922863 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGG 45922804 Query 160616 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160675 || || ||||| ||| |||| ||||| || || || ||| | ||||| || ||| | ||| Sbjct 45922803 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 45922744 Query 160676 GTGCCTGTTATGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTT 160735 || || || | ||| | |||| ||||||| | | || || ||||| || || Sbjct 45922743 GTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTA 45922684 Query 160736 CGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAG-AC 160794 ||||| || || ||||| || || || | ||||| ||||||| ||||||||| || Sbjct 45922683 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTAC 45922624 Query 160795 CTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGA 160854 ||||||||||| || || || | || || || | ||||| ||| | ||| || || Sbjct 45922623 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 45922564 Query 160855 CCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTA 160914 || || ||||| || |||| ||||| || || ||||| || | || ||||| ||||| Sbjct 45922563 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTA 45922504 Query 160915 AT 160916 || Sbjct 45922503 AT 45922502 Score = 297 bits (328), Expect = 2e-75 Identities = 372/511 (73%), Gaps = 6/511 (1%) Strand=Plus/Minus Query 160406 TTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGT 160465 ||| | ||||||||||| || |||||| | ||||| || ||||||||||||||||| || Sbjct 13891746 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 13891687 Query 160466 ATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTAT 160525 || |||| | ||| ||||| | || |||||||| | ||| ||||| ||||| || | Sbjct 13891686 GTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTATTC 13891627 Query 160526 GAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACT 160585 |||||||| || ||||||||||| || ||| | | || || | ||||| ||| Sbjct 13891626 GAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAAACT 13891567 Query 160586 TATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAAC 160645 ||||| ||||||||||| |||||||| ||||| || ||||| ||| |||| ||||| || Sbjct 13891566 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 13891507 Query 160646 AAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAGT 160705 || || ||| | ||||| || ||| | ||||| || || | ||| | |||| | Sbjct 13891506 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 13891447 Query 160706 ATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATT 160765 |||||| | |||| || ||||| || || ||||| || || ||||| || || || Sbjct 13891446 ATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATC 13891387 Query 160766 AGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAA 160825 | ||||| |||||||| ||||||||||| ||||||||||| || || || | || || Sbjct 13891386 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 13891327 Query 160826 GGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAA 160885 || | ||||| ||| | ||| || || || || ||||| || |||| ||||| || Sbjct 13891326 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 13891267 Query 160886 GAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || || | |||||||| ||||||| Sbjct 13891266 GA------GCCACGTGGCAACGCTCTTTAAT 13891242 Score = 199 bits (220), Expect = 4e-46 Identities = 236/320 (74%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 160325 TTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCA 160384 || || || || ||| |||| || ||| ||||||| || || ||| ||||| || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 160385 GCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTC 160444 || || ||| ||||| | | ||| | ||||||||||| || |||||| | ||||| || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 160445 CATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTT 160504 ||||||||||||||||| || || |||| | || ||||| | || || ||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 160505 ACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGAT 160564 || || || ||||| || | ||| ||||| || ||||||||||| || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 160565 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 160624 | || || | ||||| |||||||| |||||||| || || ||||| ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 160625 TTCGGTATTGCGTTTTCTAA 160644 || ||| |||| ||||| || Sbjct 15262456 TTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 327 bits (362), Expect = 1e-84 Identities = 368/490 (75%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 158877 ATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTT 158936 ||| |||||||||| |||||||| |||||||||||||| || || || ||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 158937 GCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCA 158996 ||||| |||||||| || || || ||| |||||||||||| | || || || | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 158997 CTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGA 159055 | | || | ||||| ||||||| || || || | ||||||| || || ||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 159056 AGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATA 159115 ||||| || |||||||| || || || |||||||| || || || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 159116 CGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGG 159175 ||| || |||||||| ||||| || ||||||||| | ||||| |||||||| | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 159176 CATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTT 159235 || |||||||| || | || | || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 159236 CAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAA 159295 |||||| || | ||||| | || ||||| || | || || ||||| ||| | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 159296 CCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 159355 |||||| ||| ||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 159356 CCTTGCTGCT 159365 ||| |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 187 bits (206), Expect = 3e-42 Identities = 229/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 159051 CAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTC 159110 ||||| ||||| || |||||||| | | || |||||||| || || || || |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 159111 CAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTT 159170 ||||| ||| || |||||||| ||||| || ||||||||| | ||||| |||||||| Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 159171 GTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTC 159230 | || || |||||||| || | || | || ||| | |||||||| ||||| ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 159231 AACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTA 159290 || || ||||| || | ||||| || ||||| || | || |||||||| ||| | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 159291 CTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 159350 | || ||||| ||| ||||||||||| ||||| || | ||| || |||| || | Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 159351 CTCGACCTTGCTG 159363 || ||||| |||| Sbjct 3609960 CTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 123 bits (136), Expect = 3e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 160341 TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCC 160400 |||| || ||| ||||||| || || ||| ||||| || ||||| || ||| ||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 160401 TGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTG 160460 | | ||| | ||||||||||| || |||||| | ||||| || |||||||||||||||| Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 160461 CTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACAC 160520 | || || |||| | || ||||| | || || ||||| | || || || ||||| | Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 160521 TGTATGAAGATGGAGA 160536 | | ||| || || || Sbjct 19895331 TATTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 116 bits (128), Expect = 4e-21 Identities = 186/262 (71%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 |||||||| | || |||||| | | | |||| | ||| |||||| || || ||| | Sbjct 19905520 TTTGACATTATGGATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGA-TGATCTAGC 19905578 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 19905579 GTTTTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 19905638 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 160077 | ||| ||||||||||||||| | || ||||||||| | | ||| ||||| ||||| Sbjct 19905639 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 19905696 Query 160078 T-ACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGG 160136 | || || ||||| ||| || || | | | | || ||| | | || || |||| Sbjct 19905697 TAACCGCAGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 19905756 Query 160137 GTCCTGAGGCTCAAGGGGATTT 160158 | || || || ||||||||||| Sbjct 19905757 GCCCAGAAGCACAAGGGGATTT 19905778 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||||| | | | || ||||| |||||||| || |||||||| Sbjct 8166110 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGC 8166051 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 8166050 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 8165991 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT 160066 | ||| ||||||||||||||| | || ||||||||| | || ||| Sbjct 8165990 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552473517128960