Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1 540 1e-148 seq7 318 7e-82 seq12 178 2e-39 seq9 132 6e-26 seq2 100 3e-16 >seq1 Length=46096743 Score = 540 bits (598), Expect = 1e-148 Identities = 725/1002 (72%), Gaps = 5/1002 (0%) Strand=Plus/Minus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| ||| | | ||||| ||||| ||| | || |||||||| ||| | ||| Sbjct 45923508 TGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTT 45923451 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || ||| ||||||| || || Sbjct 45923450 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 45923391 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTA-CGGCAGCT 180209 |||| ||||| || | || ||||||| | |||||| || ||||||| | || || Sbjct 45923390 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCGGCA 45923332 Query 180210 GTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 180269 || || || ||||| | | | | || ||| | | ||||| ||||| || || | Sbjct 45923331 GTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCA 45923272 Query 180270 CAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 180329 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 45923271 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCAT 45923212 Query 180330 GGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGT 180389 || || || || ||||| || || ||| |||| || |||||||| || || | || Sbjct 45923211 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAA 45923152 Query 180390 ATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTT 180449 | || ||||| ||||| ||| |||||||||| || |||||||| ||||| | |||| Sbjct 45923151 TTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTC 45923092 Query 180450 CTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCA 180509 || || || |||||||| || ||| ||||||||||| | || |||||| |||||||| Sbjct 45923091 CTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCG 45923032 Query 180510 ATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCAT 180569 || ||| ||||| | ||||| | || || || || || ||||| | ||||| || ||| Sbjct 45923031 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 45922972 Query 180570 ATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACT 180629 |||||||||||||| | || |||||| || |||||| || || ||||| | |||| Sbjct 45922971 ATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAACT 45922912 Query 180630 GTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCA 180689 ||||| ||||| || | ||| || || || ||||| ||||| || ||| | || Sbjct 45922911 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 45922852 Query 180690 ACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 180749 || |||| || |||||||| || |||||||| | || ||||| ||||| || ||||| Sbjct 45922851 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTT 45922792 Query 180750 GGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 180809 ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 45922791 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 45922732 Query 180810 GGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGAT 180869 ||| |||||| |||||||| | | || || ||||| ||||| ||||| || || Sbjct 45922731 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATGAC 45922672 Query 180870 TTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAG-ACGTTCTACACCAA 180928 ||||| || || ||| | ||||| |||||||||| || ||| || ||||||||||| Sbjct 45922671 TTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACCAA 45922612 Query 180929 GAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGA 180988 || || || || || || || | ||||| ||| ||||| || ||||| || || || Sbjct 45922611 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 45922552 Query 180989 AAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 ||| | || |||||||| || ||||||||| | || ||||| Sbjct 45922551 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 45922510 Score = 297 bits (328), Expect = 2e-75 Identities = 366/498 (73%), Gaps = 2/498 (0%) Strand=Plus/Minus Query 180513 TTTAGATTCCTACTCTTTCTTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCCATAT 180571 ||| ||| | | || ||||||| | || || || || ||||| | ||||| || ||||| Sbjct 13891761 TTTCGATCCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 13891703 Query 180572 GATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGT 180631 |||||||||||| || || |||| | ||| |||||| || |||||||| | || || Sbjct 13891702 GATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGT 13891643 Query 180632 GGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAAC 180691 || ||||| || | |||||||| || ||||| ||||| || ||| | |||| Sbjct 13891642 AGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAAC 13891583 Query 180692 GCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 180751 |||| || |||||||| || ||||||||||| |||||||| ||||| || ||||| || Sbjct 13891582 TCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGG 13891523 Query 180752 TATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 180811 | |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | || Sbjct 13891522 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGG 13891463 Query 180812 TCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 180871 | |||||| |||||||| | |||| || ||||| ||||| ||||| || || || Sbjct 13891462 TTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTT 13891403 Query 180872 CGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAA 180931 ||| || || ||| | ||||| ||||||||||| || ||||| ||||||||||| || Sbjct 13891402 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 13891343 Query 180932 CATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAA 180991 || || || || || || | ||||| ||| ||||| || ||||| || || ||||| Sbjct 13891342 TATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 13891283 Query 180992 CTTCATCTTCCCTGAAGA 181009 | || |||||||| || Sbjct 13891282 TCTTATATTCCCTGAGGA 13891265 Score = 208 bits (230), Expect = 9e-49 Identities = 238/320 (74%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 180447 TTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCA 180506 || || || || |||||||| || ||| ||||||||||||| || |||||| |||||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 180507 GCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTC 180566 || || ||| ||||| | ||||| | || || || || || ||||| | ||||| || Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 180567 CATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTA 180626 ||||||||||||||||| || || |||| | || |||||| || || ||||| | | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 180627 ACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGAT 180686 || || || ||||| || | ||| ||||| || ||||| ||||| || ||| | Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 180687 TCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 180746 |||| |||| || |||||||| || |||||||| || || ||||| ||||| || ||| Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 180747 TTCGGTATTGCATTTTCTAA 180766 || ||| |||| ||||| || Sbjct 15262456 TTTGGTGTTGCTTTTTCCAA 15262437 >seq7 Length=31244610 Score = 318 bits (352), Expect = 7e-82 Identities = 366/490 (75%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 179359 ATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTT 179418 ||| |||||||||| |||||||| |||||||||||||| || || || ||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 179419 GCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCG 179478 ||||| |||||||| || || || ||| ||||||||| || | || || || | | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 179479 CTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGA 179537 ||| || | ||||| ||||| | || || || | ||||| | || || ||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGA 14634499 Query 179538 AGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATA 179597 |||||||| ||||| || || || || ||||| || || || || || ||||||||||| Sbjct 14634500 GGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATA 14634559 Query 179598 TGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGG 179657 ||| ||||||||||| || ||||| ||||||||| | ||||| ||||| || | || Sbjct 14634560 TGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGG 14634619 Query 179658 CATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAACTT 179717 || |||||||||||| | || | || ||||| |||||||| ||||| ||||| || Sbjct 14634620 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTT 14634679 Query 179718 CAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAA 179777 |||||| || | |||| | ||||| || || |||| || ||||| || | | || Sbjct 14634680 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 14634739 Query 179778 CCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGA 179837 |||||| | | ||||||||||| ||||| || ||||| || ||||||||||| || || Sbjct 14634740 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 14634799 Query 179838 CCTTGCTGCT 179847 ||| |||||| Sbjct 14634800 CCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 178 bits (196), Expect = 2e-39 Identities = 227/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 179533 CAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTC 179592 ||||| |||||||| ||||| || | | || ||||| || || || || || |||||| Sbjct 3609660 CAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCTTC 3609719 Query 179593 CAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTT 179652 |||||||| ||||||||||| || ||||| ||||||||| | ||||| ||||| || Sbjct 3609720 CAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 3609779 Query 179653 GTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTC 179712 | || || |||||||||||| | || | || ||| | |||||||| ||||| ||| Sbjct 3609780 GCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGATTC 3609839 Query 179713 AACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTA 179772 || || ||||| || | |||| ||||| || || |||| || ||||| || | Sbjct 3609840 AATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATATC 3609899 Query 179773 TTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 179832 | || ||||| | | ||||||||||| ||||| || | ||| || |||| || | Sbjct 3609900 ATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTTCT 3609959 Query 179833 CTCGACCTTGCTG 179845 || ||||| |||| Sbjct 3609960 CTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 132 bits (146), Expect = 6e-26 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 180463 TGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCC 180522 |||| || ||| ||||||||||||| || |||||| |||||||| || ||| ||||| Sbjct 19895511 TGGGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCA 19895452 Query 180523 TACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTG 180582 | ||||| | || || || || || ||||| | ||||| || |||||||||||||||| Sbjct 19895451 TCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTG 19895392 Query 180583 CTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACAC 180642 | || || |||| | || |||||| || || ||||| | ||| ||||| ||||| | Sbjct 19895391 CCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTC 19895332 Query 180643 TGTATGAAGATGGAGA 180658 | | ||| || || || Sbjct 19895331 TATTTGAGGACGGTGA 19895316 >seq2 Length=39559433 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| ||||| ||||| || |||||||| ||| | ||| Sbjct 8166100 TGGACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 8166041 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || ||| ||||||| || || Sbjct 8166040 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 8165981 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGT 180188 |||| ||||| || | || ||||||| | |||||| Sbjct 8165980 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610329508450560