Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 104 3e-17 >seq6 Length=34615992 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||| || | ||| | || | ||||| |||| ||| || Sbjct 2940661 TCCACCTTGATCAACATAACGGGCCGTATCATTGAAAACACGTAGCATAGGAACAATCCC 2940720 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | ||||||||||| ||||| || || | || |||||||| || || Sbjct 2940721 ATTAGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 2940780 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || ||||| || ||| || | |||||| ||||| || ||||| || Sbjct 2940781 TACACCAATGCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 2940840 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 2940841 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2940882 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 8272983 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 8273042 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| ||||||||||| ||||| ||| || || || || |||| Sbjct 8273043 GCCCGGCATGAGGCCCCGCTTCTTGAGCCAAAAGATGGC-GCAGAAGGAACCCGAGAAGA 8273101 Query 39735 AGATGCCTTCTAC 39747 |||| || || || Sbjct 8273102 AGATCCCCTCGAC 8273114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908696963680