Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 seq6 98.7 8e-16 seq2 89.7 4e-13 >seq5 Length=31082981 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || || | || | |||| || || ||||| ||||| |||||||| Sbjct 9801593 TGCCTCCCCTCAGCCTAAGCACAAGGTGTAGAGTGGACTCTTTCTGAATGTTGTAGTCTG 9801652 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | | || | || || ||||| || || ||| | || |||||||||||||| || | Sbjct 9801653 CCAAGGTCCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGTTGATCTGGGG 9801712 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||| || || |||||| |||| | | || | ||||||| || |||| Sbjct 9801713 GGATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATCGTGTCTGAGGACTCAA 9801772 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || | ||| || | || || |||| || ||||||||||| ||||| Sbjct 9801773 CCTCCAAAGTGATGGTCTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 9801821 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| ||||| || | | |||| | || ||||| || || || Sbjct 9801853 GTGGACTCTTTCTGAATGTTGTAATCTGCAAGGGTGCGGCCATCCTCGAGTTGCTTGCCC 9801912 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| |||||||| || || || | |||||| || || |||||| || Sbjct 9801913 GCAAAGATGAGGCGCTGTTGGTCAGGTGGAATACCCTCCTTGTCCTGAATCTTGGCCTTG 9801972 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || |||| || ||||| || || ||||| | ||||| || || || Sbjct 9801973 ACGTTGTCGATCGTATCTGAGGACTCAACCTCGAGGGTTATGGTCTTGCCAGTGAGTGTC 9802032 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 9802033 TTCACAAAGATCTGCAT 9802049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | || | ||| | || || || || || || |||||||| Sbjct 26219451 TGCCTCCCCGGAGGCGGAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 26219392 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | ||||||||||| || || || | ||||||||||| || ||||| | Sbjct 26219391 CAAGAGTGCGGCCATCTTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAG 26219332 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||| ||| || | | | || | || || | || |||| Sbjct 26219331 GGATTCCCTCCTTGTCCTGGATTTTGGCCTTGACGTTATCAATGGTATCCGAGGACTCAA 26219272 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || ||||| | ||||| || ||||| ||||| ||||| ||||| Sbjct 26219271 CCTCAAGGGTTATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 26219223 >seq6 Length=34615992 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| || | |||| | || || ||||| || || Sbjct 32009438 GTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 32009379 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | ||||| || || ||||||| || Sbjct 32009378 GCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 32009319 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | || ||||| || || || || | |||||| || || || Sbjct 32009318 ACATTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTTTTGCCGGTGAGGGTC 32009259 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 32009258 TTCACAAAGATCTGCAT 32009242 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || ||||| || || Sbjct 32010122 GTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCTAGCTGCTTGCCA 32010063 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | || || || || ||||||| ||| Sbjct 32010062 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 32010003 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||||| || || || || || || || | ||||| ||||| || Sbjct 32010002 ACGTTGTCGATCGTGTCTGAGGACTCGACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTC 32009943 Query 27231 TTCACAAAGATTTGCATAGCT 27251 || || ||||| |||||| || Sbjct 32009942 TTGACGAAGATCTGCATACCT 32009922 >seq2 Length=39559433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| | ||||| || || ||||| ||||| ||| | Sbjct 31556147 CCTCCACGAAGACGGAGGACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCGGCC 31556206 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | || || || || || || || | ||||| | ||| || || || || Sbjct 31556207 AATGTGCGCCCATCCTCCAGTTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGG 31556266 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||| || || | | || | ||||| | | || ||| Sbjct 31556267 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACT 31556326 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||||||| | ||||| |||||||| ||||||||||| ||||| Sbjct 31556327 TCCAGAGTTATGGTCTTGCCAGTCAGAGTCTTCACAAAGATCTGCAT 31556373 Score = 86.0 bits (94), Expect = 5e-12 Identities = 123/171 (72%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAA-ATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 |||| || ||||| || |||||| || ||||||||||| || ||||| || | ||||| Sbjct 2779662 CGTCCTCCAGCTGCTTGCCGGCGAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCC 2779721 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 ||||| |||||| || | | || | ||||| | || || || || || || Sbjct 2779722 TTATCTTGGATCTTAGCCTTGACATTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTG 2779781 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAAT 27260 |||| ||||| |||| || ||||||||||| ||||| |||| | |||| Sbjct 2779782 ATAGTCTTGCCAGTCAATGTCTTCACAAAGATCTGCAT--CTGCAAGAAAT 2779830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934337853344