Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 127 3e-24 seq2 82.4 1e-10 >seq6 Length=34615992 Score = 127 bits (140), Expect = 3e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 933869 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCC 933810 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | ||| | || ||||||||||| || ||||||||||| ||||| || || Sbjct 933809 CCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAGATCCCCTCGACGCA 933750 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 933749 GGCGAAGGCCACGAGGCGCTCGGCGAAG 933722 Score = 123 bits (136), Expect = 3e-23 Identities = 200/287 (70%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 |||||||| || || | || | ||| ||| |||||||| | | || ||||| ||| Sbjct 31291560 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 31291619 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || ||||| | ||||| ||||||||||| || ||||| ||||| | Sbjct 31291620 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 31291679 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCA-CTG-----CGTTGCTTGCCC 11626 |||||||| || ||||||||| | ||||||| | ||| | |||| | || Sbjct 31291680 GTTTGTTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 31291733 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || |||||||| ||||||| || || || || || ||| || || | | || Sbjct 31291734 ACAGCATCAATTTCATCAACAAATACTATGCAAGGGGCATTCTCCTTTGCCTTCTTGAAA 31291793 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| ||||| | |||||| || || ||||||||||||||||| Sbjct 31291794 AGATCACGAACACGGGAGGCACCAACTCCCACAAACATCTCCACAAA 31291840 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 8272998 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 8273057 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 ||||||||| | |||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 8273058 CCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAGATCCCCTCGACGCA 8273117 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 8273118 AGCGAAGGCGACGAGGCGCTCGGCGAAG 8273145 Score = 104 bits (114), Expect = 3e-17 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || || || || || || |||||||||||| | Sbjct 34192748 CAAATCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCC- 34192806 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | ||||| | || ||| | || || ||||||||||||||||||||||| || Sbjct 34192807 -CCTCCGAGCCCAGCGCCACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGAT 34192865 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| ||| || ||||| Sbjct 34192866 GCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACC 34192925 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| ||| || || | | ||| | ||| || ||| || || | || || Sbjct 34192926 GACGAACAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCC 34192985 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 ||||| ||| || || || || ||||| || || || ||| || |||| ||| || Sbjct 34192986 CGCGACGGCACGCGCCAGCAGTGTCTTGCCGGTTCCGGGCGGGCCGACGAGCAGGCATCC 34193045 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 34193046 CTTGGGGATCTTGGCCCC 34193063 Score = 104 bits (114), Expect = 3e-17 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||| ||||||||||| || | | || || || || || || |||||||||||| | Sbjct 34199066 CAAATCCATCCATCTCCGTCAAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCC- 34199124 Query 11598 GCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 | | | | ||||| | || ||| | || || ||||||||||||||||||||||| || Sbjct 34199125 -CCTCCGAGCCCAGCGCCACGCTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGAT 34199183 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || | ||| | || || || || | ||||| ||| || ||||| Sbjct 34199184 GCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACC 34199243 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 || |||| ||| || || | | ||| | ||| || ||| || || | || || Sbjct 34199244 GACGAACAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCC 34199303 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 ||||| ||| || || || || ||||| || || || ||| || |||| ||| || Sbjct 34199304 CGCGACGGCACGCGCCAGCAGTGTCTTGCCGGTTCCGGGCGGGCCGACGAGCAGGCATCC 34199363 Query 11836 TCGGGGGATCTTGGCACC 11853 |||||||||||| || Sbjct 34199364 CTTGGGGATCTTGGCCCC 34199381 >seq2 Length=39559433 Score = 82.4 bits (90), Expect = 1e-10 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || ||||| || ||||||||||| |||||||| | || ||| | ||| | || Sbjct 38035411 TGAGGCCTTGGAGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTGA 38035352 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| ||| |||||| | | |||| ||||| || ||| ||| || || || | Sbjct 38035351 GACATCATGTGGTATGTTTTGATAGCAGATTCAATATCATCCTTGTGTATCCCAATAGAA 38035292 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGAT- 112118 || | ||| | ||| | |||||| |||||| | | ||| | | | || | |||| Sbjct 38035291 ACTCTCATTAGCATATGCTGTGGTCTTTCCACAACCTTTCCA-CCAACTTTTAACAGATA 38035233 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || || |||||||||| || | ||||||||| Sbjct 38035232 AGATC-TCTCAAGGGTCTTAAAACCAAAGTA 38035203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031905795200