Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6 176 6e-39 >seq6 Length=34615992 Score = 176 bits (194), Expect = 6e-39 Identities = 319/456 (70%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 934168 TAGTCGCCGACACGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 934109 Query 129788 AAATCAAATGGGTT-----CTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGA 129842 | || || ||||| | ||| | || || || ||| ||| | | |||| | Sbjct 934108 CAGTCGAACGGGTTGGCGACATTG---TACATCTT-CTTGCA-TCCGAGCGCCATGAGCA 934054 Query 129843 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-G 129901 | || || | |||| |||| ||||||| ||| |||| |||||| |||| ||| | Sbjct 934053 GCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCG 933994 Query 129902 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATG 129961 || |||||||| || ||| |||| || |||| ||||| || || || |||||| Sbjct 933993 CGACG-GGGAGCGCATCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATG 933935 Query 129962 GCGTGAATGGTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCA 130018 | || | | | || | | | ||| | | ||| | || ||| || | | Sbjct 933934 TCTTGGACGCGCGCCTCATCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAAG-CG 933878 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||||||||||||||| ||||||||||| || || |||||| || || ||| Sbjct 933877 AAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 933818 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| ||||||||||| | |||||| || || || |||||||| ||||||||||||||| Sbjct 933817 ATGAGTCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAGAAGATCCCC 933758 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || || ||||| || | ||| ||||| || ||| Sbjct 933757 TCGACGCAGGCGAAGGCCACGAGGCGCTCGGCGAAG 933722 Score = 154 bits (170), Expect = 2e-32 Identities = 314/456 (69%), Gaps = 18/456 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 8272699 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 8272758 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || ||| || | | ||||||| || Sbjct 8272759 CAGTCGAAAGGGTTGGCGACGTTGTACATCTTCTTGCAG-CCGAGCGCCATGAGGAGGCG 8272817 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| ||| |||||| |||| ||| | || Sbjct 8272818 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 8272877 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| || |||| ||||| || || || ||||| || Sbjct 8272878 G-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 8272936 Query 129966 GAATGGTCTCCGTGCCAGGTCTA--TTGC-GCAAAG----TCTTGAAGAGTTCCACGGCA 130018 | | || ||| ||| | |||| || || || | || | || ||| Sbjct 8272937 GGACA-----CGGGCCTCGTCGAGCTTGCCGCGGAGGAGTTCGTATAG-GAGGCA-GGCG 8272989 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| || |||||||| ||||||||||| || || |||||| || || ||| Sbjct 8272990 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 8273049 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| ||||||||||| | ||| || || || || || || || ||||||||||||||| Sbjct 8273050 ATGAGGCCCCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAGAAGATCCCC 8273109 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || || ||||| || | ||| ||||| || ||| Sbjct 8273110 TCGACGCAAGCGAAGGCGACGAGGCGCTCGGCGAAG 8273145 Score = 122 bits (134), Expect = 1e-22 Identities = 281/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | |||||||| || || || |||| || | ||| Sbjct 34192648 ACGGTGACCTGGCGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGC 34192707 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| |||| || || | | |||| ||||||||||| ||| Sbjct 34192708 CTGTTTGTCGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 34192767 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCAGGCATACCACCCGCACTGCG 14229 ||||| || |||||||| || || | |||||| ||| | | | | || || | || Sbjct 34192768 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACG 34192826 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 34192827 CTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 34192886 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | |||| || || ||| |||||||| || |||| ||| || || | Sbjct 34192887 CTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTC 34192946 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || ||||| || || |||||| || | || ||||||| ||| || || || || Sbjct 34192947 GGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAG 34193006 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 ||||| || || || || || |||| | |||| | | | |||||| |||| || Sbjct 34193007 TGTCTTGCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34193063 Score = 122 bits (134), Expect = 1e-22 Identities = 281/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||| || | |||||||| || || || |||| || | ||| Sbjct 34198966 ACGGTGACCTGGCGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGC 34199025 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| ||||| |||| |||| || || | | |||| ||||||||||| ||| Sbjct 34199026 CTGTTTGTCGCGGCGAGCACAATGACACCGCTGTTCCCGGCAAATCCATCCATCTCCGTC 34199085 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCA-TTCGCAGGCATACCACCCGCACTGCG 14229 ||||| || |||||||| || || | |||||| ||| | | | | || || | || Sbjct 34199086 AAGAGCTGGTTGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACG 34199144 Query 14230 TTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGC 14289 ||| | |||||||| ||||| ||||| ||||| ||||| || || || | ||| Sbjct 34199145 CTGCCTCCCGACGGCATCAATCTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 34199204 Query 14290 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 14349 || || | |||| || || ||| |||||||| || |||| ||| || || | Sbjct 34199205 CTTCTCGAACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTC 34199264 Query 14350 GGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAG 14409 || ||||| || || |||||| || | || ||||||| ||| || || || || Sbjct 34199265 GGAGGCGGCGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAG 34199324 Query 14410 GGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 14466 ||||| || || || || || |||| | |||| | | | |||||| |||| || Sbjct 34199325 TGTCTTGCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34199381 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 ||||| || || || | ||| | ||| || ||||||||| | ||| || || || Sbjct 31291560 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 31291619 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || |||| ||| || || | ||||| |||||||||||||||| | ||||| | Sbjct 31291620 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 31291679 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 14245 |||||||| | ||||||||| || | ||| | | | |||| | || || || Sbjct 31291680 GTTTGTTCCCTTTCATCATTTCCACCACCAATACCTGTCCCCCTTTGCCTTCCAACAGCA 31291739 Query 14246 TCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAAAGATATC 14304 ||||||||||| | || || || || || ||| | | | | ||| ||| | ||| Sbjct 31291740 TCAATTTCATCAACAAATACTATGCAAGGGGCATTCTCCTTTGCCTTCTTGAAA-AGATC 31291798 Query 14305 TCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || || | |||||| || |||||||||||||||||||| Sbjct 31291799 ACGAACACGGGAGGCACCAACTCCCACAAACATCTCCACAAA 31291840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435107234720