Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 154 2e-32 >seq6 Length=34615992 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| |||||||| Sbjct 8273145 CTTCGCCGAGCGCCTCGTCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGTTCCTT 8273086 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 8273085 CTGCGCCATCTTTTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 8273026 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 8273025 GCTCATCTCCCGCGACGAGGGCCTGCAC 8272998 Score = 141 bits (156), Expect = 1e-28 Identities = 120/148 (81%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| | || || || || || ||||| ||||||||||| || || || Sbjct 933722 CTTCGCCGAGCGCCTCGTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCATT 933781 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 933782 CTGCGCCATCTTCTGGCTCAAGAAGCGGGGACTCATGCCGGGCCTCACCTTCTCCAACGA 933841 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 933842 GCTCATCTCCCGCGACGAGGGTCTCCAC 933869 Score = 123 bits (136), Expect = 3e-23 Identities = 253/370 (68%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| || || || | || | ||| ||| ||||||||| | | || || || || Sbjct 31291560 TCAAAACGTCCAGGTCTGAGTAAAGCGGAATCCAGGATATCAGCCCTGTTGGTGGCAGCA 31291619 Query 9587 ATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 || |||| || || || | ||||||||||||||||| |||| | || || | | Sbjct 31291620 ATAACAATGATTCCAGTGTTCCCCTCAAAACCATCCATCTCAGTCAGTAACTGATTCAAA 31291679 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA-CTG-----CGTTGCTTTCCC 9700 |||||||||| ||||||||| | ||||||| | ||| | |||| |||| Sbjct 31291680 GTTTGTTCCCTTTCATCATTTCC------ACCACCAATACCTGTCCCCCTTTGCCTTCCA 31291733 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAG-CGACTTCAAA 9759 || |||||||| ||||||| || || ||||| || ||| || | | ||| ||| Sbjct 31291734 ACAGCATCAATTTCATCAACAAATACTATGCAAGGGGCATTCTCCTTTGCCTTCTTGAAA 31291793 Query 9760 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 9819 ||||| || ||||| ||| || || || ||||||||||||||||| | | | | Sbjct 31291794 -AGATCACGAACACGGGAGGCACCAACTCCCACAAACATCTCCACAAACTCAGATCCTG- 31291851 Query 9820 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 | |||| || || || ||| || ||| || ||||| || ||| || | |||||||| Sbjct 31291852 ATATTGAGAAAAACGGCACACCAGCTTCTCCTGCAATAGCCTTGGCAAGCAAAGTCTTAC 31291911 Query 9879 CCGTACCTGG 9888 | || || || Sbjct 31291912 CAGTTCCAGG 31291921 Score = 123 bits (136), Expect = 3e-23 Identities = 279/410 (68%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | ||||| ||||| ||||| | || || | ||| | || |||||| Sbjct 34192660 CGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGCCTGTTTGTCGCG 34192719 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| |||| | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 34192720 GCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAGAGCTGGT 34192777 Query 9642 TAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9700 | || || || |||| |||||||| | | | | | ||||| | || ||| | || Sbjct 34192778 TGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACGCTGCCTCCCG 34192836 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAA 9758 |||||||||||||||||||||||||||||||| || | || || | || || | Sbjct 34192837 ACGGCATCAATCTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGA 34192894 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | || || | || | |||||| ||||| || |||| ||| || || | | ||||| Sbjct 34192895 ACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGAGGCGG 34192954 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 || || |||||| || | || ||||| | ||| || || || || ||||| | Sbjct 34192955 CGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTGC 34193014 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 | || || ||| || |||| | |||| | | | || |||||||| || Sbjct 34193015 CGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34193063 Score = 123 bits (136), Expect = 3e-23 Identities = 279/410 (68%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || | ||||| ||||| ||||| | || || | ||| | || |||||| Sbjct 34198978 CGATCGAACCTCCCTGGGCGAAGAAGCGCCGCGTCGAGCACATCGGGCCTGTTTGTCGCG 34199037 Query 9584 GCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGT 9641 |||| |||| | ||| |||| | |||| ||||||||||| ||||| || |||| Sbjct 34199038 GCGAGCACAATGACACCGCTGTTCCCGG--CAAATCCATCCATCTCCGTCAAGAGCTGGT 34199095 Query 9642 TAATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCC 9700 | || || || |||| |||||||| | | | | | ||||| | || ||| | || Sbjct 34199096 TGATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCGCCACGCTGCCTCCCG 34199154 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAA 9758 |||||||||||||||||||||||||||||||| || | || || | || || | Sbjct 34199155 ACGGCATCAATCTCATCAATGAAGACGATGCAAGG--GGCCTTGGCCTTGGCCTTCTCGA 34199212 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | || || | || | |||||| ||||| || |||| ||| || || | | ||||| Sbjct 34199213 ACAGGTCTCTGACCCTGGAGGCGCCGACACCGACGAACAGCTCGACGAACTCGGAGGCGG 34199272 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 || || |||||| || | || ||||| | ||| || || || || ||||| | Sbjct 34199273 CGCAGGAGAAGAAGGGCACTCCGGCCTCCCCCGCGACGGCACGCGCCAGCAGTGTCTTGC 34199332 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT-GGAATCTTGGCGCC 9927 | || || ||| || |||| | |||| | | | || |||||||| || Sbjct 34199333 CGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 34199381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260712510880