Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6 205 1e-47 >seq6 Length=34615992 Score = 205 bits (226), Expect = 1e-47 Identities = 582/876 (66%), Gaps = 35/876 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || || |||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 8273558 TTCCCCATCCGTTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCTGG 8273499 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTAC 59678 | | |||||| | |||||| ||| ||| | | |||||| |||| | Sbjct 8273498 ACGGCGGAGGAGGTCGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTCTCCCCC 8273439 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 8273438 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCTGCCTCCGACGGCATCGTG 8273379 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || || ||| | |||||||| || | Sbjct 8273378 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCACGCGCC 8273322 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| ||||||||||||| ||||||||| || | Sbjct 8273321 TTCTACGGATTCCAGATCGC-CATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGCT 8273263 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 8273262 CGAGACCTACATCCGCGACGACGCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGT 8273203 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 |||||| || | || || ||||||||||||| ||||| || | | |||| Sbjct 8273202 CCCCGCCGTCCGCCGCAAGGCTGAATGGGCCATGCGCTGGATCGACGGCGGCGAGCGC-- 8273145 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| || || ||| Sbjct 8273144 TTCGCCGAGCGCCTCGTCGCCTTCGCTTGCGTCGAGGGGATCTTCTTCTCGGGTTCCTTC 8273085 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || || |||||||| ||||| ||||||||||||||||| | |||||||||||| Sbjct 8273084 TGCGCCATCTTTTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 8273025 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTC--ACACC 60150 || || ||||| ||||||||||| || || || || || | | |||| | || || Sbjct 8273024 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTC-CTATACGAACTCC 8272967 Query 60151 TATTGGAAAAATGCCCTTCCAAG--GATATTCACAAGATTGT-TCAGTGGGCTTGTGAAG 60207 | | || || | | | | | | | | |||| || | | | | | || Sbjct 8272966 TCCGCGGCAA--GCTCGACGAGGCCCGTGTCCGCGAGATCGTCGCCGACGCCGT-CGACA 8272910 Query 60208 TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAG 60267 | ||||| |||||| || || ||||| || | ||| | || ||| ||| | Sbjct 8272909 TCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACC 8272850 Query 60268 AAATGACGCAGTACATTCAGTTTGTCGCGGACCG---CCTCATG--GCCCAGTTTGGAGA 60322 |||| |||||||| |||| ||||| ||||| ||||||| || | | | ||| Sbjct 8272849 TCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGA 8272790 Query 60323 AGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGG 60382 || || ||| ||| ||||||||||||||||||||| |||||| || | || Sbjct 8272789 AG-----ATGTACAACGTCGCCAACCCTTTCGACTGGATGGAGCTCATCTCCCTGCAGGG 8272735 Query 60383 GAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| ||||| || || Sbjct 8272734 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 8272699 Score = 201 bits (222), Expect = 1e-46 Identities = 390/566 (69%), Gaps = 15/566 (3%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| || | | || |||||| Sbjct 933309 TTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCAGTGGCGTCGTTCTGG 933368 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA-GCTCAATTAC-- 59678 | | |||||| | |||||| |||| ||| | | |||||| || | | || Sbjct 933369 ACGGCGGAGGAGGTGGACCTCTCCGGCGACGCGCGCCACTGGGACGCCGCGCTGTCACCC 933428 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || ||| || || || |||||||||||||| ||||| |||||| Sbjct 933429 GACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCATTGTG 933488 Query 59739 ATGGAAAATATAGAC---ATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | | | | | ||| || || ||| | |||||||| || || Sbjct 933489 CTCGAGAACCTCGCCTCCAGGTTCATGTCC---GACGTGCAGGTCGCCGAGGCACGCGCG 933545 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||| | | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 933546 TTCTATGGATTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 933604 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | | || ||||| ||||| || || Sbjct 933605 CGAGACCTACATCCGCGACGACGTCGAGAAGGATCGCCTCTTCCGCGCCATCGACACCGT 933664 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 |||||| || | || || || |||||||||| |||||| || | | |||| Sbjct 933665 CCCCGCCGTGCGCCGCAAGGCTGACTGGGCCATGCGGTGGATCGACGGCGGCGAGCGC-- 933722 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 933723 TTCGCCGAGCGCCTCGTGGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCATTC 933782 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| || |||||||||||||| | |||||||||||| Sbjct 933783 TGCGCCATCTTCTGGCTCAAGAAGCGGGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 933842 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || ||||| |||||||| ||||| Sbjct 933843 CTCATCTCCCGCGACGAGGGTCTCCA 933868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524717721280