Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 152 6e-32 seq12 98.7 1e-15 seq1 93.3 5e-14 seq7 89.7 6e-13 seq3 89.7 6e-13 seq2 89.7 6e-13 seq5 82.4 8e-11 >seq6 Length=34615992 Score = 152 bits (168), Expect = 6e-32 Identities = 280/403 (69%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | |||||||||||| ||||||||||| |||| Sbjct 8273041 AGGCCCGGCATGAGGCCCCGCTTCTTGAGCCAAAAGATGGCGCAGAAGGAACCCGAGAAG 8273100 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || |||||||| ||||| | ||||| | || ||| | | Sbjct 8273101 AAGATCCCCTCGACGCAAGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 8273157 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||||||||| || || ||| || ||||| || ||||| || Sbjct 8273158 TCGATCCAGCGCATGGCCCATTCAGCCTTGCGGCGGACGGCGGGGACGGTGTCGATGGCG 8273217 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | || | || || |||||| Sbjct 8273218 CGGAAGAGGCGGTCCTTCTCGGCGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 8273277 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 |||| || || || |||| || ||| |||| | ||||||| | || ||||| || Sbjct 8273278 ATCTCGGAGTGGATGTTCTCGATG-GCGATCTGGAATCCGTAGAAGGCGCGTGCCTCGGC 8273336 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | ||||||||||| ||||| Sbjct 8273337 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 8273396 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| || || || || ||| ||||||||||| ||| Sbjct 8273397 AGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 8273439 Score = 116 bits (128), Expect = 4e-21 Identities = 272/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| ||||| |||||||| | ||| |||||||| ||||| || || |||| Sbjct 933826 AGGCCCGGCATGAGTCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAG 933767 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 ||||| || ||||| || || ||||| || ||||| | ||||| | || ||| | | Sbjct 933766 AAGATCCCCTCGACGCAGGCGAAGGCCACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 933710 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| ||||| || || || || ||||| || ||||| || Sbjct 933709 TCGATCCACCGCATGGCCCAGTCAGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCG 933650 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | || | || || |||||| Sbjct 933649 CGGAAGAGGCGATCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 933590 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | | ||||| | || ||||| || Sbjct 933589 ATCTCCGAGTGGATGTTCTCGATGG-CGATCTGGAATCCATAGAACGCGCGTGCCTCGGC 933531 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | | ||| ||||| | || ||||| || ||||| Sbjct 933530 GACCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACAATGCCATCGGAGGC 933471 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 ||||| || || || || || ||||||||||| ||| Sbjct 933470 CGCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCG 933428 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 27765474 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 27765415 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 27765414 TGAGCTACGAAAGC 27765401 >seq12 Length=27944835 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 |||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 3688763 ACTGCTTTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCA 3688822 Query 79682 ATTGAGCTACGAAAGC 79697 | |||||||||||||| Sbjct 3688823 ACTGAGCTACGAAAGC 3688838 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 27427872 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 27427931 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 27427932 TGAGCTACGAAAGC 27427945 >seq1 Length=46096743 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1414447 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1414388 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 1414387 TGAGCTACGAAAGCAA 1414372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 34564154 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34564095 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 34564094 TGAGCTACGAAAGC 34564081 >seq7 Length=31244610 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1689211 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1689270 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1689271 TGAGCTACGAAAGC 1689284 >seq3 Length=38925377 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 7416470 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7416529 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 7416530 TGAGCTACGAAAGC 7416543 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 28826576 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 28826635 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 28826636 TGAGCTACGAAAGC 28826649 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 34677481 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 34677540 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 34677541 TGAGCTACGAAAGC 34677554 >seq2 Length=39559433 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 27762766 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 27762825 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 27762826 TGAGCTACGAAAGC 27762839 >seq5 Length=31082981 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3006947 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3007006 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 3007007 TGAGCTACGAGAGCTAA 3007023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215917917600