Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq7 300 2e-76 seq12 176 5e-39 >seq7 Length=31244610 Score = 300 bits (332), Expect = 2e-76 Identities = 361/491 (74%), Gaps = 0/491 (0%) Strand=Plus/Plus Query 176609 TTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAG 176668 ||||| |||||||||| ||||| || ||||| || ||||| ||||| || ||| | || | Sbjct 14634319 TTATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTG 14634378 Query 176669 TAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTT 176728 |||| ||||| || || || || || ||| || ||||| || | || || ||| Sbjct 14634379 TAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTA 14634438 Query 176729 CACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAG 176788 | | || || || || ||||||||||| || | ||||||| ||| || |||| Sbjct 14634439 GTTTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAG 14634498 Query 176789 AAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGT 176848 | |||||||| || || ||||| || || || ||||| ||||| || | |||||||| | Sbjct 14634499 AGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAAT 14634558 Query 176849 ATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTT 176908 ||||| ||| || ||||| | | | ||||||||| | || || | || || | Sbjct 14634559 ATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAG 14634618 Query 176909 GCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACT 176968 | || ||||| ||||| | ||| || | || ||||| |||||||| ||||| ||||| | Sbjct 14634619 GGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATT 14634678 Query 176969 TCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTA 177028 ||||||| ||||| | || | | ||| || ||| ||| |||| |||||| | | Sbjct 14634679 TCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCA 14634738 Query 177029 ACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTG 177088 ||||||| || |||||||||||||| |||||||| |||||||||||||||||||| || | Sbjct 14634739 ACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAG 14634798 Query 177089 ACCTTGCTGCT 177099 |||| |||||| Sbjct 14634799 ACCTAGCTGCT 14634809 >seq12 Length=27944835 Score = 176 bits (194), Expect = 5e-39 Identities = 234/325 (72%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 176773 TACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGT 176832 |||| ||| | ||||| |||||||| || || ||| | | || || ||||| ||||| Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 176833 CGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCA 176892 || | |||||||| |||||| ||| || ||||| | | | ||||||||| | || Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 176893 GCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAAC 176952 || | || || | | || ||||| ||||| | ||| || | || ||| | |||||| Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 176953 CTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACA 177012 || ||||| ||||| || ||||| ||||| | || ||| ||| || || ||| Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 177013 TGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCT 177072 |||| |||||| | || ||||| || |||||||||||||| |||||||| | ||||||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 177073 CACAACTTCCCACTTGACCTTGCTG 177097 |||| || | || ||||| |||| Sbjct 3609948 CACAGTTTTTCTCTAGACCTAGCTG 3609972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603494309475840