Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5 109 4e-19 seq4 107 1e-18 seq6 98.7 7e-16 seq2 87.8 1e-12 >seq5 Length=31082981 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || ||||| || |||||| | || ||||| ||| | Sbjct 9801822 AATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTTTGGAGGTTGAGTCCTC 9801763 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || ||| || ||||| || ||| | || |||||||| Sbjct 9801762 AGACACGATCGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGTATCCCCCCAGATCA 9801703 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || ||||| || || || || | || || || | || ||||| Sbjct 9801702 ACAGCGTCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGGACCTTGGCAGACTACAA 9801643 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||||||||| |||| | || | ||| || | ||||| Sbjct 9801642 CATTCAGAAAGAGTCCACTCTACACCTTGTGCTTAGGCTGAGGGGAGG 9801595 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || ||||| || || || || || ||||| ||||| ||| | Sbjct 9802049 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTCGAGGTTGAGTCCTCA 9801990 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | | || || ||| ||||| || ||| | || || || ||| Sbjct 9801989 GATACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATTCCACCTGACCAA 9801930 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||| ||||| ||||| || || | ||||| | | ||||||||| Sbjct 9801929 CAGCGCCTCATCTTTGCGGGCAAGCAACTCGAGGATGGCCGCACCCTTGCAGATTACAAC 9801870 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 9801869 ATTCAGAAAGAGTCCAC 9801853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || || || || || || || || || || || | Sbjct 9801593 ATGCAGATTTTCGTCAAGACCCTGACCGGCAAGACCATTACGCTTGAGGTCGAGTCTTCC 9801534 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | || ||||| || || | || || || || Sbjct 9801533 GATACAATCGACAATGTGAAGGCGAAGA-TTCAGGACAAGGAGGGCATCCCTCCGGACCA 9801475 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || |||||||| || || || |||| ||||||| | | |||||||| Sbjct 9801474 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTGGCTGATTACAA 9801415 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 9801414 CATTCAGAAGGAGTCCAC 9801397 Score = 89.7 bits (98), Expect = 3e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAA 23694 || || ||||| || || || || ||||| || | ||||| |||| | | ||| | Sbjct 9801122 ACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTCAGACACGATTGACAACGTGAAAGCA 9801063 Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 || ||| ||||| ||||| | || || ||||| ||||| | || ||||| ||||| Sbjct 9801062 AAGATTCAGGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCCTGATCTTTGCTGGCAAG 9801003 Query 23755 CAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813 || || || || | ||||| |||| ||||||||||| || || || ||||| || || Sbjct 9801002 CAGCTCGAGGATGGCCGCACCTTAGCAGATTACAACATTCAGAAGGAATCCACTTTGCA 9800944 >seq4 Length=33711903 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || ||||| ||| | Sbjct 30264739 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCCTCT 30264798 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || ||| | || |||||||| Sbjct 30264799 GACACAATCGACAATGTGAAGGCCAAGA-TCCAGGACAAGGAGGGTATTCCACCAGATCA 30264857 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||||||||| || || || || | ||| || | | || ||||| Sbjct 30264858 GCAGCGCCTCATCTTTGCCGGCAAGCAGCTTGAGGATGGACGTACCCTTGCAGACTACAA 30264917 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 30264918 CATCCAGAAGGAGTCCAC 30264935 >seq6 Length=34615992 Score = 98.7 bits (108), Expect = 7e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||| | || ||||| || |||||||| || || || ||| || Sbjct 31537985 ATGCAGATCTTTGTGAAGACCTTGACAGGAAAGACCATCACTCTTGAGGTCGAGTCCTCG 31537926 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || || ||||| Sbjct 31537925 GACACGATCGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGAATCCCTCCTGATCA 31537867 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||||||||| || || || |||| | || | | |||||||| Sbjct 31537866 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGTAGGACCCTGGCTGATTACAA 31537807 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 31537806 CATTCAGAAGGAGTCCAC 31537789 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || || | Sbjct 32009698 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGTCGTCT 32009757 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || ||||| || Sbjct 32009758 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 32009817 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || ||||| || ||||| |||| || || | | |||||||||| Sbjct 32009818 CAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGTACCCTTGCCGATTACAAC 32009877 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 32009878 ATCCAGAAGGAATCCAC 32009894 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || || ||||| || | Sbjct 32010382 ATGCAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCC 32010441 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || | | ||||| || || | || || || || Sbjct 32010442 GACACTATTGACAATGTGAAGGCGAAGA-TCCAGGACAAGGAGGGCATTCCCCCGGACCA 32010500 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | |||||||| || || || || || || | || || | | |||||||| Sbjct 32010501 GCAGCGTCTGATATTTGCTGGTAAGCAGCTTGAGGATGGCCGTACCCTTGCGGATTACAA 32010560 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||||||| | || || || Sbjct 32010561 CATCCAGAAGGAGTCCACACTCCACTTGGT 32010590 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || ||||| ||||| ||||| || | Sbjct 31538213 ATGCAGATCTTTGTGAAGACACTTACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCT 31538154 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | || ||||| || || | || || || || Sbjct 31538153 GATACAATTGACAATGTCAAGGCCAAGA-TTCAGGACAAGGAGGGCATTCCACCTGACCA 31538095 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| ||||| ||||| || || | ||||| | | |||||||| Sbjct 31538094 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGTCGCACCCTCGCGGATTACAA 31538035 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 31538034 CATCCAGAAGGAGTCCAC 31538017 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 |||||||| ||| | || |||||||| || | | || || || || ||||| |||||| Sbjct 30154729 GACAAAGAGGGTATCCCCCCAGATCAGCAAAGGCTGATTTTCGCAGGGAAACAGCTGGAA 30154788 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGT 23819 || | ||| || |||| ||||||||||| || ||||||||||| | ||||| || Sbjct 30154789 GATGGACGTACATTAGCTGATTACAACATTCAGAAAGAGTCCACGCTCCATTTGGT 30154844 >seq2 Length=39559433 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || || || ||||| ||||| || | | Sbjct 31556373 ATGCAGATCTTTGTGAAGACTCTGACTGGCAAGACCATAACTCTGGAAGTGGAGAGCTCT 31556314 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||||| | ||||| || || | || || || || Sbjct 31556313 GACACCATCGACAATGTCAAGGCAAAAA-TCCAGGACAAGGAGGGCATCCCACCTGACCA 31556255 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || |||||||| || | ||||| || | ||||||||| Sbjct 31556254 GCAGAGGCTCATCTTTGCTGGGAAGCAACTGGAGGATGGGCGCACATTGGCCGATTACAA 31556195 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || | ||||| || Sbjct 31556194 CATTCAGAAGGAGTCTACCCTTCATTTGGT 31556165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009550566096