Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 105 9e-18 >seq6 Length=34615992 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | ||| || | ||| |||| | | ||| |||| ||| || Sbjct 2940662 CCACCTTGATCAACATAACGGGCCGTATCATTGAAAACACGTAGCATAGGAACAATCCCA 2940721 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| |||||||||||||| ||||| || ||| | || |||||||| || ||| Sbjct 2940722 TTAGAGGTTCCATTTGTTCCTCGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGAT 2940781 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || ||||| || || ||| | ||| || ||||| ||||| ||||| Sbjct 2940782 ACACCAATGCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGATT 2940841 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 2940842 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 2940882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668695799680