Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1 553 2e-152 seq7 354 9e-93 seq12 203 4e-47 seq2 129 7e-25 >seq1 Length=46096743 Score = 553 bits (612), Expect = 2e-152 Identities = 734/1009 (73%), Gaps = 9/1009 (1%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| ||| |||||||||||| |||||| | || |||||||| || | |||||| Sbjct 45923506 GACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTTTT 45923449 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | || |||||| |||| ||||| ||||| || || |||| Sbjct 45923448 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 45923389 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165342 ||||| || ||| | |||||||||||| | || ||| |||| ||||||| | ||||||| Sbjct 45923388 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCGGCAG 45923331 Query 165343 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTC 165402 |||| || || || | | | | || ||| | |||| |||||||| || || | | Sbjct 45923330 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 45923271 Query 165403 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 165462 ||||||| || | || ||||| ||| | || || || ||||||||||| || ||||| | Sbjct 45923270 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 45923211 Query 165463 GAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGT 165521 | || |||||||| |||||||||||| | || || |||||||| || || || || | Sbjct 45923210 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCAAT 45923151 Query 165522 ATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTT 165581 | || ||||| ||||| ||| | |||||||| || || ||||| || ||| | || Sbjct 45923150 -TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTC 45923092 Query 165582 CTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCA 165641 || || ||||| ||||||||||| |||||||| | ||| || || || ||||| Sbjct 45923091 CTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCG 45923032 Query 165642 ATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCAC 165701 || || |||||| | |||||| ||||||| || ||||| |||||| |||| || ||||| Sbjct 45923031 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 45922972 Query 165702 ATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACA 165761 |||||||| || || | | ||||| | || |||| | || |||||||| | || Sbjct 45922971 ATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAACT 45922912 Query 165762 GTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGT 165821 || || || ||| | | ||| || ||||| ||||| || ||| || ||| | Sbjct 45922911 GTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCA 45922852 Query 165822 ACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTT 165881 ||||| | || ||||||||||| |||||||| | ||| || || ||||| || || ||| Sbjct 45922851 ACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCTTT 45922792 Query 165882 GGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATG 165941 ||| ||||||| |||||| |||||| | || ||||||||||| ||||| || |||| Sbjct 45922791 GGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCACC 45922732 Query 165942 GGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGAT 166001 || | |||| ||| ||||||| | | || || || || || || ||||| ||||| Sbjct 45922731 GGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATGAC 45922672 Query 166002 TTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGA-AACGTTCTATACGAA 166060 || || || ||||| || | || || | ||||| || ||||| || ||||| || || Sbjct 45922671 TTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACCAA 45922612 Query 166061 AAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGA 166120 ||| || || | || || || | ||||| ||| |||| || || || |||||||| Sbjct 45922611 AAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 45922552 Query 166121 GAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || | |||||||| || || | ||| | || ||||| |||||| Sbjct 45922551 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 45922503 Score = 307 bits (340), Expect = 1e-78 Identities = 383/525 (73%), Gaps = 6/525 (1%) Strand=Plus/Minus Query 165645 TTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATG 165704 || |||| | | || ||| ||||||| || ||||| |||||| |||| || ||||| ||| Sbjct 13891761 TTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATG 13891702 Query 165705 ATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTA 165764 ||||| || || || | ||||||| ||| |||| | || || ||||| | ||| ||| Sbjct 13891701 ATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTA 13891642 Query 165765 GAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACT 165824 || || ||| | | ||||||||||| ||||| || ||| || ||| | ||| Sbjct 13891641 GAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACT 13891582 Query 165825 CAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGT 165884 || | || ||||||||||| ||||||||||||||||| || ||||| || || |||||| Sbjct 13891581 CAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGT 13891522 Query 165885 ATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGA 165944 ||||||| |||||| |||||| | || ||||||||||| ||||| || |||| || Sbjct 13891521 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGT 13891462 Query 165945 CTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTT 166004 | |||| ||| ||||||| | |||| || || || || || ||||| ||||| || Sbjct 13891461 TTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTC 13891402 Query 166005 GTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAAC 166064 || || ||||| || | || || || ||||| || ||||| || ||||| || ||||| Sbjct 13891401 GTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAAT 13891342 Query 166065 ATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAAC 166124 || || | || || || | ||||| ||| |||| || || || |||||||| || Sbjct 13891341 ATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAAT 13891282 Query 166125 TTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || | |||||||| || |||| | |||||||| |||||| Sbjct 13891281 CTTATATTCCCTGAGGA------GCCACGTGGCAACGCTCTTTAA 13891243 Score = 205 bits (226), Expect = 1e-47 Identities = 235/316 (74%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 165577 TTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCG 165636 |||| || || ||||| ||||||||||| |||||||| |||||| || || || | Sbjct 15262758 TTTTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 15262699 Query 165637 CAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCT 165696 |||| || || |||||| | |||||| ||||||| || ||||| |||||| |||| || | Sbjct 15262698 CAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 15262639 Query 165697 TTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTG 165756 |||| |||||||| || || || | ||||||| || |||| | || |||||||| | Sbjct 15262638 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGG 15262579 Query 165757 TTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTG 165816 || || || || ||| | | ||| |||||||| ||||| || ||| || ||| Sbjct 15262578 CAACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTA 15262519 Query 165817 ATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGA 165876 | ||||| | || ||||||||||| |||||||| ||||| || || ||||| || | Sbjct 15262518 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAA 15262459 Query 165877 TTTTTGGTATTGCTTT 165892 | |||||| ||||||| Sbjct 15262458 TCTTTGGTGTTGCTTT 15262443 >seq7 Length=31244610 Score = 354 bits (392), Expect = 9e-93 Identities = 372/489 (76%), Gaps = 0/489 (0%) Strand=Plus/Plus Query 164426 ATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTA 164485 ||| | || |||||||| || || |||||||| ||||| || || || ||| | || ||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 164486 GCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCG 164545 || ||||| || |||||||| || |||||||| ||||| ||||| |||| || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 164546 CTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAA 164605 || | | || ||||| ||||| || ||| || | ||||||| |||||||| || Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 164606 GAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATAC 164665 ||||| || || || || || |||||||| ||||| ||||| || | || |||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 164666 GCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGT 164725 ||| || |||||||| ||||| | ||||||||| | || || |||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 164726 ATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTC 164785 || ||||| |||||| | || |||| || ||||| |||||||| ||||| ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 164786 AACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAAC 164845 ||||| || | | ||| | || ||||| || | || || ||||| || | ||||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 164846 CGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 164905 |||||| ||| || |||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 164906 CTTGCTGCT 164914 || |||||| Sbjct 14634801 CTAGCTGCT 14634809 >seq12 Length=27944835 Score = 203 bits (224), Expect = 4e-47 Identities = 240/325 (74%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 164588 TACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGT 164647 |||| ||| |||| || ||||| || || || || | ||||||| ||||| ||||| Sbjct 3609648 TACAGATTTTGTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGC 3609707 Query 164648 CGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCA 164707 || | || |||||||| ||| || |||||||| ||||| | ||||||||| | || Sbjct 3609708 CGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCT 3609767 Query 164708 GCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAAC 164767 || |||||||| | || || ||||| |||||| | || |||| || ||| | |||||| Sbjct 3609768 GCTTGGCCTGTAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAAC 3609827 Query 164768 CTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 164827 || ||||| ||||| || ||||| || | | ||| || ||||| || | || ||| Sbjct 3609828 CTAAACGGATTCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACC 3609887 Query 164828 TGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCT 164887 ||||| || | |||| |||||| ||| || |||||||| |||||||| | ||||||| Sbjct 3609888 TGGGCTGATATCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCT 3609947 Query 164888 CACAACTTCCCTCTCGACCTTGCTG 164912 |||| || |||| ||||| |||| Sbjct 3609948 CACAGTTTTTCTCTAGACCTAGCTG 3609972 >seq2 Length=39559433 Score = 129 bits (142), Expect = 7e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| | |||||||||||| |||||||| || |||||||| || | |||||| Sbjct 8166098 GACGACTGGTTACGAAGAGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 8166039 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | || |||||| |||| ||||| ||||| || || |||| Sbjct 8166038 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8165979 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT 165320 ||||| || ||| | |||||||||||| | || ||| Sbjct 8165978 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 8165943 Score = 127 bits (140), Expect = 2e-24 Identities = 181/250 (72%), Gaps = 5/250 (2%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||| | | ||| |||| ||| |||||| || || ||| | || | |||||| Sbjct 19905532 GATGACTGGTTAAGAAGGGACCATTTTGTTTTTTATGA-TGATCTAGCGTTTTGCTTTTT 19905590 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | || |||||| |||| ||||| ||||| || || |||| Sbjct 19905591 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 19905650 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAG 165342 ||||| || ||| | |||||||||||| | | ||| ||||| |||||| || || |||| Sbjct 19905651 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACCGCAGCAG 19905708 Query 165343 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTC 165402 |||| || || || | | | | || ||| | |||| |||||||| || || | | Sbjct 19905709 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCAGAAGCAC 19905768 Query 165403 AAGGGGACTT 165412 ||||||| || Sbjct 19905769 AAGGGGATTT 19905778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557654316351840