Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1 462 3e-125 seq7 372 4e-98 seq12 214 2e-50 seq9 125 9e-24 >seq1 Length=46096743 Score = 462 bits (512), Expect = 3e-125 Identities = 719/1017 (71%), Gaps = 9/1017 (1%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGT 178898 |||||| | | || |||||| ||| | || || || |||||| | || ||||| || Sbjct 45923518 TTTGATATTATGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGC 45923461 Query 178899 CTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTC 178958 || | || || ||| |||||| | || | || |||||| | || || ||||| || Sbjct 45923460 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 45923401 Query 178959 GTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTT 179018 || || || |||||||| || || | || ||| ||| | || || || |||||| | Sbjct 45923400 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 45923341 Query 179019 ACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGT 179078 || || || || || || ||||| | | | | ||| || | | || |||||||| Sbjct 45923340 ACCGCGGCAGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGC 45923281 Query 179079 CCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTG 179138 || ||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 45923280 CCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTT 45923221 Query 179139 GCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG- 179197 || ||||| || || || || || |||||||||||| | || || |||||| | || || Sbjct 45923220 GCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGG 45923161 Query 179198 TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGT 179257 ||| || | | || ||||| |||||||| | || ||||| ||||| ||||| ||||| Sbjct 45923160 TCTGTTCAAT-TGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGT 45923102 Query 179258 GTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGG 179317 || | || || || ||||| || ||||| ||| ||||||||| ||||| ||||| Sbjct 45923101 TTCCTTATTCCTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGG 45923042 Query 179318 AGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAA 179377 || |||||||| || || ||| | |||||| | || || || || || |||||| | || Sbjct 45923041 CGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAA 45922982 Query 179378 CCCGTTCCACATGATGGGTGTAGC-AG-GTATCCTGGGCGGAGCATTGCTTTGTGCCATT 179435 ||| || || |||||||| || || || |||| | |||| | |||| || || ||| Sbjct 45922981 CCCATTTCATATGATGGGAGTTGCCAGAGTATTAGGTGCGGCTC--TGCTATGCGCTATT 45922924 Query 179436 CATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAG 179495 ||||| || || || || ||||| || ||||| ||| |||| ||||||| ||| Sbjct 45922923 CATGGGGCAACTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGC 45922864 Query 179496 GCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGG 179555 || || | || || |||| || || || ||||| ||||| || | || || || ||| Sbjct 45922863 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGG 45922804 Query 179556 TCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTT 179615 || || ||||||||| | || || |||||| |||||| |||||||||||||| | ||| Sbjct 45922803 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 45922744 Query 179616 GTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTT 179675 || || |||| ||| | |||| | ||||| | | || || || || ||||| Sbjct 45922743 GTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTA 45922684 Query 179676 AGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAG-AC 179734 | || |||||||| ||||| || || ||| | || || | |||||||| || ||| || Sbjct 45922683 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTAC 45922624 Query 179735 GTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGA 179794 ||||| ||||| || || || || || || ||| | ||||| ||||||||| | || Sbjct 45922623 TTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGA 45922564 Query 179795 TCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 ||| || |||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 45922563 TCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 45922507 Score = 284 bits (314), Expect = 1e-71 Identities = 376/522 (72%), Gaps = 6/522 (1%) Strand=Plus/Minus Query 179330 TTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACAT 179389 ||| || | | | || ||| | || || || || || |||||| | ||||| || || || Sbjct 13891762 TTTTCGATCCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATAT 13891703 Query 179390 GATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGT 179449 |||||| || || || | | |||| ||| |||| || || || ||||| ||||| || Sbjct 13891702 GATGGGAGTTGCCGGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGT 13891643 Query 179450 AGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTAC 179509 ||| ||||| || || ||||| |||| ||||||| ||| || || | || || Sbjct 13891642 AGAAAACACTCTATTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAAC 13891583 Query 179510 ACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGG 179569 |||| || || || ||||| ||||| ||||| ||||| || ||||| || |||||||| Sbjct 13891582 TCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGG 13891523 Query 179570 TATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGG 179629 | | || || |||||| |||||| |||||||||||||| | ||||| || |||| || Sbjct 13891522 TGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGG 13891463 Query 179630 TCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACTT 179689 | | |||| | ||||| | |||| || || || ||||| | || |||||||| Sbjct 13891462 TTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTT 13891403 Query 179690 TGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAA 179749 ||||| || || ||| | || || || |||||||| || ||||| ||||| ||||| || Sbjct 13891402 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAA 13891343 Query 179750 CATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAAA 179809 || || || || || ||| | ||||| ||||||||| | ||||| || |||||||| Sbjct 13891342 TATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAA 13891283 Query 179810 CTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || |||| ||||| || |||| | ||||||||||| Sbjct 13891282 TCTTATATTCCCTGAGGA------GCCACGTGGCAACGCTCT 13891247 Score = 168 bits (186), Expect = 8e-37 Identities = 227/316 (72%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 179263 TTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTG 179322 |||| || || ||||| || ||||| ||| ||||||||||| ||| ||||| || | Sbjct 15262758 TTTTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAG 15262699 Query 179323 CAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGT 179382 ||||||| || || ||| | |||||| | || || || || || |||||| | ||||| | Sbjct 15262698 CAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCAT 15262639 Query 179383 TCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTG 179442 | || |||||||| || || || | | |||| || |||| || || |||||||| | Sbjct 15262638 TTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGG 15262579 Query 179443 CTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCG 179502 | || || || ||||| || ||||| || |||| ||||||| ||| || || Sbjct 15262578 CAACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTA 15262519 Query 179503 AGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGA 179562 | || || |||| || || || ||||| ||||| || || || || || ||||| || | Sbjct 15262518 ACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAA 15262459 Query 179563 TCTTTGGTATCGCCTT 179578 |||||||| | || || Sbjct 15262458 TCTTTGGTGTTGCTTT 15262443 >seq7 Length=31244610 Score = 372 bits (412), Expect = 4e-98 Identities = 384/498 (77%), Gaps = 6/498 (1%) Strand=Plus/Plus Query 178096 ATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTC 178155 ||| |||| ||||| ||||| || |||||||| ||||| || || |||||||| || || Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 178156 GCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCG 178215 |||||||| || || ||||| || |||||||| ||||| ||||| |||| || || | | Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAG 14634439 Query 178216 CTGGTTC-GTGAAACCACCGAGAACGAAAGTCAG--AACTATGGTTACAAGTTCGGTCAA 178272 | | || | |||||||| || |||||| || | || | ||||||| || |||||| Sbjct 14634440 TTTGATCAGGGAAACCACTGAAAACGAA--TCCGCTAATGAGGGTTACAGATTTGGTCAA 14634497 Query 178273 GAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAA 178332 || |||||||| || || || || || ||||||||||| || || || | ||||||||| Sbjct 14634498 GAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAA 14634557 Query 178333 TACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTC 178392 || || || |||||||| ||||| | ||||||||| | || || |||||||| | Sbjct 14634558 TATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCA 14634617 Query 178393 GGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAAC 178452 || || |||||||||||| | ||| |||| || ||||| |||||||| ||||| ||||| Sbjct 14634618 GGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAAT 14634677 Query 178453 TTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTC 178512 |||||||| || | | ||||| || || || | || || ||||| || | || Sbjct 14634678 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATC 14634737 Query 178513 AACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTT 178572 ||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 14634738 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 14634797 Query 178573 GACCTCGCTGCTGCTGAA 178590 ||||| |||||| |||| Sbjct 14634798 GACCTAGCTGCTCTTGAA 14634815 >seq12 Length=27944835 Score = 214 bits (236), Expect = 2e-50 Identities = 242/323 (75%), Gaps = 1/323 (0%) Strand=Plus/Plus Query 178268 GTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCT 178327 ||||||| |||||||| || || || | | ||||||||||| || || || | |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 178328 TCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTG 178387 ||||||| || || |||||||| ||||| | ||||||||| | || || ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 178388 TTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTT 178447 | | || || |||||||||||| | ||| |||| || ||| | |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 178448 TCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACG 178507 |||| || ||||| || | | |||| || || || | || |||||||| || Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 178508 TTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCC 178567 | |||| |||||| ||||||||||||||| |||||||| | ||||||||||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 178568 CTCTTGACCTCGCTGCTGCTGAA 178590 |||| ||||| |||| | ||||| Sbjct 3609958 CTCTAGACCTAGCTG-TTCTGAA 3609979 >seq9 Length=26294017 Score = 125 bits (138), Expect = 9e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 179283 GGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTA 179342 ||||| ||| ||||||||||||||| ||||| || |||||||| || || ||| | Sbjct 19895509 GGACAATCCGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATC 19895450 Query 179343 CTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCA 179402 |||||| | || || || || || |||||| | ||||| || || |||||||| || || Sbjct 19895449 CTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 19895390 Query 179403 GGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTC 179462 || | | |||| || |||| || || |||||||| || || || || ||||| || Sbjct 19895389 GGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTA 19895330 Query 179463 TTTGAAGACAGTGA 179476 ||||| ||| |||| Sbjct 19895329 TTTGAGGACGGTGA 19895316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596307110553920