Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20punctata_20[genbank_20GCA_5F000573905.1_202014-02-25] 12 sequences; 393,816,603 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1 504 8e-138 seq7 336 3e-87 seq12 203 4e-47 seq9 109 7e-19 >seq1 Length=46096743 Score = 504 bits (558), Expect = 8e-138 Identities = 725/1012 (72%), Gaps = 9/1012 (1%) Strand=Plus/Minus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 |||| |||||| ||| | | || || ||||| ||| | || |||||||| || | |||| Sbjct 45923508 TGGACGACTGG-TTAGAAGAGACCGTTTTGTTTTT-TAGGATGGTCTGGCCTATTGCTTT 45923451 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||||||| | || | || || ||| |||| || || || ||||| || || Sbjct 45923450 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 45923391 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTG 170784 |||| ||||| ||| | || ||||| || | |||||| |||||| | || ||||| | Sbjct 45923390 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCGGCAG 45923331 Query 170785 TGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 170844 | || || ||||| || | | | || ||| | | ||||| ||||| || || | | Sbjct 45923330 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGCCCGGAAGCAC 45923271 Query 170845 AGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 170904 | |||||||| || |||| ||| | || || || |||| |||||| || ||||| | Sbjct 45923270 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTCCATG 45923211 Query 170905 GAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGG 170963 | || ||||| || |||||||||||| | || || |||||| | ||| ||| || Sbjct 45923210 GGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCAA 45923152 Query 170964 ATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | | || || |||||||| | |||||||| || |||||||| ||||| | | ||| Sbjct 45923151 TTGCGGCCTTATAATGCAATTTCATTCTCTGGCCCAATCGCTGTTTTTGTTTCCTTATTC 45923092 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 || || ||||| || || || || |||||||||| | || ||||| || ||||| Sbjct 45923091 CTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTTCGCCGAGTTTTGGCGTAGCAGCG 45923032 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 || || || ||| | |||||| | ||||| || || || ||||| |||| ||||||||| Sbjct 45923031 ATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCAT 45922972 Query 171144 ATGATGGGTGTTGC-AG-GTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTA 171201 |||||||| ||||| || |||| | || | || |||| | || |||||||| | | Sbjct 45922971 ATGATGGGAGTTGCCAGAGTAT--TAGGTGCGGCTCTGCTATGCGCTATTCATGGGGCAA 45922914 Query 171202 CAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACA 171261 | || || || ||| | | ||| || |||||| ||||| ||||| || ||| || Sbjct 45922913 CTGTGGAAAACACTCTATTTGAGGACGGTGATGGTGCAAATACCTTCCGCGCTTTTAACC 45922854 Query 171262 CGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTT 171321 | ||||| | ||||| || ||||| |||||||| | |||||| || ||||| || || | Sbjct 45922853 CAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGTTAATCGCTTTTGGTCCCAAATCT 45922794 Query 171322 TTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCA 171381 ||||| | || || |||||| |||||||| |||||||||||||| ||||| || |||| Sbjct 45922793 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCGGTCA 45922734 Query 171382 TGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATG 171441 ||| | ||| | ||| | | || | | || || ||||| || || | || |||| Sbjct 45922733 CCGGTTTATGGATGAGTGCTATTGGCGTAGTCGGCCTGGCTCTAAACCTACGTGCCTATG 45922674 Query 171442 ATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAG-ACGTTCTATACC 171500 | ||||| ||||| || | ||||| ||||||| || || ||| || ||||| ||| Sbjct 45922673 ACTTCGTTTCCCAGGAAATCCGTGCAGCGAAAGATCCTGAATTTGAGTACTTTCTACACC 45922614 Query 171501 AAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACAT 171560 || || || || || || || ||| ||||||| ||||||||| | || || || ||| Sbjct 45922613 AAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCAT 45922554 Query 171561 GAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 45922553 GAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 45922502 Score = 297 bits (328), Expect = 2e-75 Identities = 374/514 (73%), Gaps = 6/514 (1%) Strand=Plus/Minus Query 171099 CTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCA 171158 || ||| | ||||| || || || ||||| |||| ||||||||||||||||| ||||| Sbjct 13891749 CTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCC 13891690 Query 171159 GGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTG 171218 || | | |||| || |||| | || || ||||| | ||| ||||| || ||| | Sbjct 13891689 GGAGTATTAGGCGCAGCTCTGCTATGCGCTATCCATGGGGCTACCGTAGAAAACACTCTA 13891630 Query 171219 TATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAG 171278 | |||||||||||| ||||| ||||| || ||| || | ||||| | ||||| Sbjct 13891629 TTCGAAGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAACCCAACTCAAGCTGAAGAA 13891570 Query 171279 ACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGC 171338 || ||||| |||||||||||||| || || ||||| || || |||||| | || || | Sbjct 13891569 ACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCC 13891510 Query 171339 AATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGT 171398 ||||| |||||||| |||||||||||||| ||||| || |||| ||| | ||| | ||| Sbjct 13891509 AATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGT 13891450 Query 171399 AGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGATTTCGTAAGTCAGGAG 171458 | | || | |||| || ||||| || || | || ||||| ||||| ||||| Sbjct 13891449 GCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAA 13891390 Query 171459 GTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAAT 171518 || | ||||| |||||||| || || ||||| ||||| ||||| || || || || || Sbjct 13891389 ATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAAC 13891330 Query 171519 GAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAAAACTTTGTGTTCCCA 171578 || ||| ||||||| ||||||||| | || || || |||||||| || | ||||| Sbjct 13891329 GAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCT 13891270 Query 171579 GAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||||| || |||||||| || |||| || Sbjct 13891269 GAGGA------GCCACGTGGCAACGCTCTTTAAT 13891242 Score = 188 bits (208), Expect = 8e-43 Identities = 230/314 (73%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 171021 TTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCA 171080 || || || ||||| || || || || |||||||||| ||||| ||||| || ||| Sbjct 15262756 TTACTGATTTATCCACTGGGACAATCCGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCA 15262697 Query 171081 GCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTT 171140 || || || || ||| | |||||| | ||||| || || || ||||| |||| |||||| Sbjct 15262696 GCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTT 15262637 Query 171141 CATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTT 171200 ||||||||||| ||||| || | | |||| || |||| | || |||||||| | Sbjct 15262636 CATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCA 15262577 Query 171201 ACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGAC 171260 || || || || ||| | | ||| ||||||||| ||||| ||||| || ||| || Sbjct 15262576 ACCGTTGAAAACACTCTATTTGAGGATGGTGATGGTGCAAATACCTTCCGCGCTTTTAAC 15262517 Query 171261 ACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATT 171320 | ||||| | ||||| || ||||| |||||||| |||||||| || ||||| || || Sbjct 15262516 CCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAATCGCTTTTGGTCCCAAATC 15262457 Query 171321 TTTGGTATCGCGTT 171334 |||||| | || || Sbjct 15262456 TTTGGTGTTGCTTT 15262443 >seq7 Length=31244610 Score = 336 bits (372), Expect = 3e-87 Identities = 368/489 (75%), Gaps = 0/489 (0%) Strand=Plus/Plus Query 169850 ATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTT 169909 ||| | || ||||| || || || |||||||| ||||| || || |||||| | ||||| Sbjct 14634321 ATGATTGTATTCCAGGCAGAACATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 14634380 Query 169910 GCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGT 169969 || || || || || || || || || || || ||||| ||| | | || || || ||| Sbjct 14634381 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 14634440 Query 169970 CTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAA 170029 | || | |||||||| || ||||| ||| || | ||||||| || |||||||| Sbjct 14634441 TTGATCAGGGAAACCACTGAAAACGAATCCGCTAATGAGGGTTACAGATTTGGTCAAGAG 14634500 Query 170030 GAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATAC 170089 |||||||| || || || || |||||||| ||||| || || || | ||||||||||| Sbjct 14634501 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 14634560 Query 170090 GCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGC 170149 ||| || |||||||| ||||| | ||||||||| | || || |||||||| | || Sbjct 14634561 GCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGCAGGG 14634620 Query 170150 ATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTC 170209 || |||||||| ||| | ||| | || ||||| |||||||| ||||| ||||| ||| Sbjct 14634621 ATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAACGGATTCAATTTC 14634680 Query 170210 AACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAAC 170269 ||||| || | | ||| | || ||||| || | || || ||||| || | ||||| Sbjct 14634681 AACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAAC 14634740 Query 170270 CGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGAC 170329 |||||| |||||| |||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 14634741 CGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 14634800 Query 170330 CTCGCTGCT 170338 || |||||| Sbjct 14634801 CTAGCTGCT 14634809 >seq12 Length=27944835 Score = 203 bits (224), Expect = 4e-47 Identities = 234/315 (74%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 170022 GTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCT 170081 ||||||| |||||||| || || || | ||||||| ||||| || || || | |||| Sbjct 3609658 GTCAAGAGGAAGAGACTTATAATATTATGACCGCTCATGGTTATTTTGGCCGATTAATCT 3609717 Query 170082 TCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTG 170141 ||||||| ||| || |||||||| ||||| | ||||||||| | || || ||||||| Sbjct 3609718 TCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 3609777 Query 170142 TTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTT 170201 | | || || |||||||| ||| | ||| | || ||| | |||||||| ||||| | Sbjct 3609778 TAGCAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGACTTTCAACCTAAACGGAT 3609837 Query 170202 TCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACG 170261 |||| || ||||| || | | ||| || ||||| || | || |||||||| || Sbjct 3609838 TCAATTTAAACCAATCTGTAGTTGATAACCAAGGTCGCGTTGTTAATACCTGGGCTGATA 3609897 Query 170262 TTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCC 170321 | |||| |||||| |||||| |||||||| |||||||| | ||||||||||| || Sbjct 3609898 TCATCAATCGTGCTAATCTTGGTATGGAAGTAATGCACGAACATAATGCTCACAGTTTTT 3609957 Query 170322 CTCTCGACCTCGCTG 170336 |||| ||||| |||| Sbjct 3609958 CTCTAGACCTAGCTG 3609972 >seq9 Length=26294017 Score = 109 bits (120), Expect = 7e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 171049 GTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGC 171108 |||||||||| || || ||||| || ||||| || || || ||| | |||||| | | Sbjct 19895499 GTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCC 19895440 Query 171109 AAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCG 171168 |||| || || || ||||| |||| ||||||||||||||||| ||||| || | | | Sbjct 19895439 AAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAG 19895380 Query 171169 GCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATG 171228 ||| || |||| | || |||||||| | || || || || ||| | | ||| || | Sbjct 19895379 GCGCGGCTCTGCTATGCGCTATTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGACG 19895320 Query 171229 GTGAT 171233 ||||| Sbjct 19895319 GTGAT 19895315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592198311170240