Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq6 152 1e-31 seq9 111 3e-19 seq1 107 4e-18 seq5 105 1e-17 seq12 104 5e-17 seq11 104 5e-17 seq10 104 5e-17 seq8 104 5e-17 seq3 104 5e-17 >seq6 Length=27870862 Score = 152 bits (168), Expect = 1e-31 Identities = 311/455 (68%), Gaps = 8/455 (2%) Strand=Plus/Plus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 1267250 TTCGCCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATTC 1267309 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 1267310 TGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAG 1267369 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||||||||| | |||| | || | || ||| Sbjct 1267370 CTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 1267429 Query 230353 CAGAACAAGCTACCATTCGAG--ACG-GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| ||| ||| | | ||| | | || || || || | | Sbjct 1267430 CGCGGCAAGCT-CGA--CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATC 1267486 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | ||||||| | || ||||| | || ||||| || | || ||||||| || || Sbjct 1267487 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGGATGAACGGCGAGCT 1267545 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| |||||||| | | | || || || | | |||| Sbjct 1267546 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCATGGCGCTCGGGTGCAAGAA 1267605 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| ||||| || | | ||||||||||| || || || || ||||| Sbjct 1267606 GATGTACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGAC 1267665 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| ||| | ||||| |||| Sbjct 1267666 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 1267700 Score = 152 bits (168), Expect = 1e-31 Identities = 310/455 (68%), Gaps = 8/455 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 || |||||||| |||||||||| | || || || || || | || || || ||| Sbjct 7610778 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTCCTTC 7610719 Query 230233 TGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAG 230292 ||||||||||| ||||| ||| || | ||||| |||||| | || |||||| Sbjct 7610718 TGCGCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAG 7610659 Query 230293 TTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTC 230352 ||||| ||||||||||| || || | |||| | || | || ||| Sbjct 7610658 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTACGACCTCCTC 7610599 Query 230353 CAGAACAAGCTACCATTCGAGACG---GTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 | |||||| | | |||| || ||| | ||| | | || || || || | | Sbjct 7610598 CGCGGCAAGCT-CGA--CGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 7610542 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACT 230468 || | ||||||| | || ||||| | || ||||| || | |||||||||| || || Sbjct 7610541 GAGAGGGAGTTCGTCTGCGACGCGCTCCCC-GTCGCGCTCGTCGGCATGAACGGCGACCT 7610483 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| ||||||||| | | | || || || | | |||| Sbjct 7610482 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGCGCTCGGCTGCAAGAA 7610423 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||||| |||||||| | | ||||||||||| || || || || ||||| Sbjct 7610422 GATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGAC 7610363 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623 |||||||||||| ||||| ||| | ||||| |||| Sbjct 7610362 CAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGA 7610328 >seq9 Length=20482102 Score = 111 bits (122), Expect = 3e-19 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 ||||||||||||||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 8994394 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 8994335 Query 165766 GAGCCCCACGATGGGC 165781 |||||||||| ||||| Sbjct 8994334 GAGCCCCACGGTGGGC 8994319 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10728153 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10728212 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 10728213 CCCACGGTGGGC 10728224 >seq1 Length=39866532 Score = 107 bits (118), Expect = 4e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||||||| || || |||| || |||||||||||||||| Sbjct 39807961 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 39808020 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 39808021 GCCCCACGGTGGGC 39808034 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 27730538 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27730597 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27730598 CCCACGGTGGGC 27730609 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 28580539 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 28580598 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 28580599 CCCACGGTGGGC 28580610 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 33229893 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 33229952 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 33229953 CCCACGGTGGGC 33229964 >seq5 Length=26652778 Score = 105 bits (116), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 165699 TTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCG 165758 |||| | || ||||||||||||||||||||||||||| || || |||| || ||||||| Sbjct 13888304 TTAATATGCAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG 13888245 Query 165759 TGGGTTCGAGCCCCACGATGGGC 165781 ||||||||||||||||| ||||| Sbjct 13888244 TGGGTTCGAGCCCCACGGTGGGC 13888222 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 22759701 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 22759642 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 22759641 CCCACGGTGGGC 22759630 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 23204726 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 23204667 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 23204666 CCCACGGTGGGC 23204655 Score = 93.3 bits (102), Expect = 9e-14 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||||||||||||||||||||| ||| || ||||||| || |||||||||||||||| Sbjct 19698093 TTGCCCGTCTAGCTCAGTCGGTAGAACGCAAGGCTTTTAACCTTGTGGTCGTGGGTTCGA 19698034 Query 165768 GCCC 165771 |||| Sbjct 19698033 GCCC 19698030 >seq12 Length=23561512 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 19765527 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19765586 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 19765587 CCCACGGTGGGC 19765598 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 20034448 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 20034389 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 20034388 CCCACGGTGGGC 20034377 >seq11 Length=27785585 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 27563400 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 27563459 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 27563460 CCCACGGTGGGC 27563471 >seq10 Length=20731201 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 14641359 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14641300 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 14641299 CCCACGGTGGGC 14641288 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 18774379 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 18774320 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18774319 CCCACGGTGGGC 18774308 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||||| |||||||| ||| Sbjct 18774146 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTTGTGGGTTCAAGC 18774087 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 18774086 CCCACGGTGGGC 18774075 >seq8 Length=25958679 Score = 104 bits (114), Expect = 5e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766 || ||||||||||||||||||||||||||| || || |||| || ||||||||||||||| Sbjct 17678576 CTGGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 17678635 Query 165767 AGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 17678636 AGCCCCACGGTGGGC 17678650 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 17900339 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17900398 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 17900399 CCCACGGTGGGC 17900410 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 17667685 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG- 17667743 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 17667744 TCCACGGTGGGC 17667755 >seq3 Length=34446443 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 16376061 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16376120 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16376121 CCCACGGTGGGC 16376132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057772253233340