Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 6e-12 >seq6 Length=27870862 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || ||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 1267413 AGGCAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 1267354 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| ||| || ||||| | |||||| || || ||| ||||| ||||| || Sbjct 1267353 AGGCCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAATGAACCCGAGAA 1267295 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 1267294 GAAGATCCCCTCGACGCAGGCGAAGGCGA 1267266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511389992747760