Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq6 114 3e-20 seq2 95.1 3e-14 seq12 86.0 1e-11 >seq6 Length=27870862 Score = 114 bits (126), Expect = 3e-20 Identities = 303/452 (67%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 1267696 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1267637 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | |||| ||| | ||| Sbjct 1267636 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCG 1267577 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| || || | || |||| ||||||||| Sbjct 1267576 GTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGAC 1267517 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || | Sbjct 1267516 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCT 1267458 Query 157497 GAACTC-TCTCCCGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | | || | ||| | ||| | | ||||| ||| | | | || Sbjct 1267457 GGACGCGTGACTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 1267400 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACC---CTTGAA 157611 || ||| || || ||||| | || |||||| ||| | ||| | | || | ||| Sbjct 1267399 GCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGA- 1267341 Query 157612 CTTCTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTC 157671 || | |||||||| |||||| ||||||||||||| || || ||| | ||||| Sbjct 1267340 -GTCCG-CGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTC 1267283 Query 157672 CAGACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 | |||| |||| |||| |||| ||| |||| Sbjct 1267282 GACGCAGGCGAAGGCGACGAGCCGCTCGGCGA 1267251 Score = 104 bits (114), Expect = 5e-17 Identities = 297/449 (66%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||| ||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 7610332 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGATATGAGCTCCAT 7610391 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | | | || ||| | || | Sbjct 7610392 CCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCG 7610451 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| ||||||||| Sbjct 7610452 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGAC 7610511 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTCAACGCTAACAGCGTGCTTGAAAATTTCAT 157496 ||| |||| || || | | ||| || | ||| | | || |||| || || || Sbjct 7610512 GGGGAGCG-CGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGC 7610570 Query 157497 GAACTCTCTCC-CGCGGCAGCCTATTCTTGAGATGCTTGTAGATGAGAACGGAAGCCGTG 157555 | || | | || || | ||| | ||| | | ||||| ||| | | | || Sbjct 7610571 GGACGCGCGCCTCGTCG-AGCTTGCCGCGGAGGAGGTCGTAGAGGAG-GCAGGCGAAGTC 7610628 Query 157556 GC-GTGAAGTCCTTCGTCTCTGGCGATGAGAGAGTTCGCGAACGACAAACCCTTGAACTT 157614 || ||| || || ||||| | || |||||| ||| | ||| | | ||| | Sbjct 7610629 GCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAG 7610688 Query 157615 CTGCCGCTTCTTCAGCCAGTAGATGGCGCAGAACGACCCACTGAACTGCACGCCCTCCAG 157674 | ||||||||| |||||| ||||||||||||| || || ||| | ||||| | Sbjct 7610689 CCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGAC 7610748 Query 157675 ACAGGTGAAGCCGACTAGCCTCTCCGCGA 157703 |||| |||| |||| || | ||| |||| Sbjct 7610749 GCAGGCGAAGGCGACGAGGCGCTCGGCGA 7610777 Score = 98.7 bits (108), Expect = 2e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| |||| |||||| || ||||||| || || ||||| ||| || Sbjct 3151739 GACTTCGATTATGATTATTTTGGTTTCAAGACTCTGGAGAGGTCTTACCTCCTGAAACTT 3151680 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | || |||||||| ||| |||| | || || || ||| Sbjct 3151679 GGCGGGAAGGTTGTTGAAAGGCCGCAACACATGTTAATGAGAGTTTCAGTGGGTATACAC 3151620 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTA-CACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||||| ||| | || |||| || || | | ||| | | |||||| | || Sbjct 3151619 AAGGATGACATTGAGTCTGCTATCAAGACCTACCATCTG-ATGTCTCAGCGCTGGTTTAC 3151561 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| ||||||| || ||||| || || || Sbjct 3151560 TCATGCTTCACCGACCCTTTTCAATGCTGGCAC 3151528 >seq2 Length=33962743 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| || || || |||| ||| ||||| | || Sbjct 32457308 CAGAGATTTTGACTATGACTACTTTGGTTTTAAGACCCTTGAGAGATCTTATCTGTTAAA 32457367 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 | ||| ||| ||| | |||||| || ||||| ||| | ||| |||| || | ||||| Sbjct 32457368 AGTTGTTGGGAAGGTTGTGGAAAGACCACAGCATATGCTAATGAGAGTTTCTATTGGGAT 32457427 Query 248925 TCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTACACCGGAATGAGTGAACGCTGG 248982 ||||||||||| || || | | ||| || | |||||| | ||| | | |||||| Sbjct 32457428 ACACAAGGATGATATTGA-ATC-TGCTATCAAAACGTACCACATGATGTCTCAGCGCTGG 32457485 Query 248983 ATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | || ||||| | || || || ||||| || || || Sbjct 32457486 TTTACTCATGCTTCGCCAACCCTTTTCAATGCTGGCAC 32457523 >seq12 Length=23561512 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 239762 GTACTACGAATTCTTGGGTGTTGATGCG-GGCGCCGGTGACGAAGAGATAAAGAAAGCGT 239820 ||||||||| || | || || | ||| ||||||| | ||| ||||| | | |||| Sbjct 22446857 GTACTACGACCTCCTCGGCGT-GCCGCGCGGCGCCGACGGCGACGAGATCAGGCGCGCGT 22446915 Query 239821 ACCGGCGTCTCGCCCTGCAGCACCACCCGGACAAGAACGGCGACCCGGAGAAGTTCAAGC 239880 ||||||| |||| || |||||||||||||||| ||||||| |||| ||||||| Sbjct 22446916 ACCGGCGCGCCGCCGTGACGCACCACCCGGACAAGGGCGGCGACGAGGAGGCGTTCAAGG 22446975 Query 239881 AGTTGACCGATGTGTACGACGTGCTCAAAGATCCCGCTAAGCGGCGGGTGTACGAC 239936 || || || | |||| | |||||| || ||||| ||| ||| |||||| Sbjct 22446976 AGGTGGCCCGCGCGTACCAGGTGCTCGGCGACCCCGCCCTGCGCGAGGTCTACGAC 22447031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073713873361024