Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 2e-13 >seq6 Length=27870862 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | ||| || ||||| || |||||||| | ||| | |||| Sbjct 3151527 AGTGCCAGCATTGAAAAGGGTCGGTGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 3151586 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| |||| ||||| || || || || | ||| || || || |||| || | ||||| Sbjct 3151587 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 3151645 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||| || || |||||||||| || | | ||||| | ||| || | |||| Sbjct 3151646 ACATGTGTTGCGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGACCTCTCCA 3151705 Query 63841 AAGTTTTAAAACCAAAATA 63859 ||| || ||||||||||| Sbjct 3151706 GAGTCTTGAAACCAAAATA 3151724 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| |||||||| ||||||||||| | || | ||||| || || ||||| Sbjct 1267410 CAGGCGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 1267351 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| |||||| || || |||||| Sbjct 1267350 CCCGGCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAG 1267291 Query 33702 ATTCCTTCTACTGCA-GCAAAGGC 33724 || || || || ||| || ||||| Sbjct 1267290 ATCCCCTCGAC-GCAGGCGAAGGC 1267268 Score = 82.4 bits (90), Expect = 1e-10 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || | ||||| || || ||||| Sbjct 7610618 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 7610677 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| ||| || || || |||||| Sbjct 7610678 CCCGGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAG 7610737 Query 33702 ATTCCTTCTACTGCA-GCAAAGGC 33724 || || || || ||| || ||||| Sbjct 7610738 ATCCCCTCGAC-GCAGGCGAAGGC 7610760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787541955040