Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05]
3,818 sequences; 339,177,042 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq5 109 5e-19
seq4 95.1 1e-14
>seq5
Length=26652778
Score = 109 bits (120), Expect = 5e-19
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-G 139594
|||| || || | ||| | || | ||| | || ||||| || || ||||| ||||| |
Sbjct 7980574 GGCCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTG 7980633
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|| | |||| || |||||||| || |||||| ||||||| || |||||||| ||
Sbjct 7980634 CTAAG-GTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGG 7980692
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713
|| |||| || ||||| ||| | |||| ||||| | || | |||||| | | |||
Sbjct 7980693 GGAATGCTCTCCTTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTC 7980751
Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||| | || ||||||||||| || || || || ||||||||
Sbjct 7980752 AACCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 7980802
>seq4
Length=30521686
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||| || | |||| || | ||| | || || || ||||| ||||| || ||
Sbjct 27324416 CCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 27324357
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || |||||||| || |||||| |||| ||||| ||||| || || ||
Sbjct 27324356 AGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 27324297
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| || || ||||| ||| || || | | || | ||||||| || ||| |||
Sbjct 27324296 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCGGAGGACTCGACC 27324237
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| | ||| | ||||||||||| | || || ||||||||||||||
Sbjct 27324236 TCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 27324190
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/198 (70%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||||||||| | || | | || || ||||| || |||
Sbjct 27324158 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 27324099
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686
|| |||| || |||||||| || ||||| ||||| || ||||| ||| | || | ||
Sbjct 27324098 GCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTC-CTGAATCTTAGCCTT 27324040
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | || |||| || ||| ||||| | ||| | |||||||| || | ||
Sbjct 27324039 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 27323980
Query 139747 TTTTACGAATATTTGCAT 139764
|| |||||||| |||||
Sbjct 27323979 CTTAACGAATATCTGCAT 27323962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496040325345600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |