Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 seq4 95.1 1e-14 >seq5 Length=26652778 Score = 109 bits (120), Expect = 5e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-G 139594 |||| || || | ||| | || | ||| | || ||||| || || ||||| ||||| | Sbjct 7980574 GGCCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTG 7980633 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || | |||| || |||||||| || |||||| ||||||| || |||||||| || Sbjct 7980634 CTAAG-GTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGG 7980692 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || |||| || ||||| ||| | |||| ||||| | || | |||||| | | ||| Sbjct 7980693 GGAATGCTCTCCTTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTC 7980751 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | || ||||||||||| || || || || |||||||| Sbjct 7980752 AACCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 7980802 >seq4 Length=30521686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | |||| || | ||| | || || || ||||| ||||| || || Sbjct 27324416 CCGCCCCGGAGGCGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCA 27324357 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || |||||| |||| ||||| ||||| || || || Sbjct 27324356 AGGGTGCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGG 27324297 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||||| || ||| ||| Sbjct 27324296 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCGATCGTGTCGGAGGACTCGACC 27324237 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||| | || || |||||||||||||| Sbjct 27324236 TCCAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 27324190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||||||||| | || | | || || ||||| || ||| Sbjct 27324158 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 27324099 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| || |||||||| || ||||| ||||| || ||||| ||| | || | || Sbjct 27324098 GCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTC-CTGAATCTTAGCCTT 27324040 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || |||| || ||| ||||| | ||| | |||||||| || | || Sbjct 27324039 CACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 27323980 Query 139747 TTTTACGAATATTTGCAT 139764 || |||||||| ||||| Sbjct 27323979 CTTAACGAATATCTGCAT 27323962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496040325345600