Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq2 95.1 2e-14 >seq6 Length=27870862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | || || | ||| |||| | | ||| |||| ||| || Sbjct 3151208 TCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACACGTAGCATAGGAACAATCCC 3151267 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| | ||||| || || ||||||||| ||| | || ||||||||| || ||| Sbjct 3151268 ATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTAGCTCGAATATTGTGAACTGA 3151327 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| ||||| || || ||| || | || ||| || || ||||||||||| Sbjct 3151328 TACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAAAGTATCATAGAT 3151387 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| | || |||||||| Sbjct 3151388 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 3151429 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| |||| Sbjct 3151527 AGTGCCAGCATTGAAAAGGGTCGGTGAAGCATGAGTAAACCAGCGCTGAGACATCAGATG 3151586 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| |||| ||||| || || || || | ||| ||||| || || | || | ||||| Sbjct 3151587 GTAGGTCTTGATAGCAGACTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 3151645 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| || || || |||||||| | ||| | ||||| | ||| || | |||| Sbjct 3151646 ACATGTGTTGCGGCCTTTCAACAACCTTCCCGCCAAGTTTCAGGAGGTAAGACCTCTCCA 3151705 Query 72596 AAGTTTTAAAACCAAAATA 72614 ||| || ||||||||||| Sbjct 3151706 GAGTCTTGAAACCAAAATA 3151724 >seq2 Length=33962743 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | ||| || ||||| || |||||||| | ||||| | | Sbjct 32457524 AGTGCCAGCATTGAAAAGGGTTGGCGAAGCATGAGTAAACCAGCGCTGAGACATCATGTG 32457465 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 |||||| | ||||| ||||| ||||| | ||| ||||| || | | || | ||||| Sbjct 32457464 GTACGTTTTGATAGCAGATTCAATATCATCCTTG-TGTATCCCAATAGAAACTCTCATTA 32457406 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||||||||| |||||||| || | ||| | | ||| |||| || ||| | || | Sbjct 32457405 GCATATGCTGTGGTCTTTCCACAACCTTCCCAACAACTTTTAACAGATAAGATCTCTCAA 32457346 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || ||||||||||| |||| || ||| |||| || ||||| || Sbjct 32457345 GGGTCTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATAAATTAT 32457297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671107169881680