Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6 183 4e-41 >seq6 Length=27870862 Score = 183 bits (202), Expect = 4e-41 Identities = 582/884 (66%), Gaps = 30/884 (3%) Strand=Plus/Minus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 7611194 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 7611135 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 7611134 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCCC 7611075 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || || ||| | | |||||||| |||| |||||| || ||| Sbjct 7611074 CCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATC 7611016 Query 125175 GTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || ||| || || | | ||| | || || || | | |||| | || | Sbjct 7611015 GTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCG-CGCG 7610958 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||||||||| ||| || |||||| | ||||| || |||||||| ||| Sbjct 7610957 CCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCGCTGCTGC 7610898 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCGACACG 125351 | || | ||||| ||||| | || || || || ||| || ||| |||||||| Sbjct 7610897 TCGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGGCTGTTCCGCGCCATCGACACC 7610839 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGT-C 125410 || ||| | | || ||||| | |||| || || |||||||| | || | || | Sbjct 7610838 GTCCCGGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC 7610779 Query 125411 TTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TA 125469 |||| |||| | || || || |||||| ||| ||||| |||||||| ||||| | Sbjct 7610778 TTCG----CCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGCTC 7610723 Query 125470 GTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTA 125529 || |||| ||||||| |||||||||||||| || |||||||| || || || | | Sbjct 7610722 CTTCTGCG-CCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCA 7610664 Query 125530 ACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCA 125589 ||||| | || || || ||||||||||| ||||| ||||| ||| || || | Sbjct 7610663 ACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCT------CT 7610610 Query 125590 ACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 || | || | ||| | || || | ||| | ||| | | || || |||| | Sbjct 7610609 ACGACCTCC--TCCGCGGCAAGCTCGA-CGAGGCGCGCGTCCGCGAGATCGTCGCCGACG 7610553 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 |||| || || ||||| | ||| | || || ||| | | ||||||| Sbjct 7610552 CCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGA 7610493 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 || || | || ||| || ||||||| ||||| || || || || || || | | | Sbjct 7610492 ACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCT---CATGGCGC 7610436 Query 125770 TTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 | ||| || ||||| ||||||| | || ||||| || | ||| |||||| | Sbjct 7610435 TCGGCTGCAAGAAGATGTACAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATATCCC 7610376 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | |||| ||||||||||| ||||||||| ||| |||| ||| Sbjct 7610375 TGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 7610332 Score = 165 bits (182), Expect = 1e-35 Identities = 398/589 (68%), Gaps = 25/589 (4%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 |||| || |||||||| | | || ||||| | ||||| ||||| ||| || || | Sbjct 1266834 TGTTCCCGATCAGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGTTCT 1266893 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTT--GA 125112 |||||| || ||||| || || ||| ||| | | | ||||| | | || | | Sbjct 1266894 GGACGGCGGAGGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTGTCGC 1266953 Query 125113 CTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAA 125172 | || ||||| | || | || ||| | | |||||||| || | ||||||||| | Sbjct 1266954 CCGAC---GAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCGGCCTCCGATGGCA 1267010 Query 125173 TCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGTCG 125231 |||| ||| || || | | ||| | || || || | | |||| ||| Sbjct 1267011 TCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGC-TCG 1267068 Query 125232 TGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACT 125290 || || ||||| ||||| ||| || |||||| | |||||||| |||||||| || Sbjct 1267069 CGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCTTCT 1267128 Query 125291 GATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATCG 125346 | | || | |||||| ||||| | |||| || || ||||| ||| |||| Sbjct 1267129 GCTCGAGACGTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATCG 1267184 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 |||| || || | | || ||||| | |||| || || |||||||| | || | Sbjct 1267185 ACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGATGGATCGACGGCGGCG 1267244 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| ||||| |||||||| ||| Sbjct 1267245 AGCGCTTCG----CCGAGCGGCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCG 1267300 Query 125466 GGTAGTTT-TGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 ||| || |||| ||||||| |||||||||||||||||||||||||| || || || Sbjct 1267301 GGTTCATTCTGCG-CCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTT 1267359 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | |||||| | || || || |||||||| || ||||| ||||| ||| Sbjct 1267360 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACTGCGACTTCGCC 1267408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741023832949680