Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 138 3e-27 seq6 118 2e-21 seq4 107 4e-18 >seq5 Length=26652778 Score = 138 bits (152), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || |||||||| || || || | || || ||||||||||| || || || Sbjct 7981029 ATGCCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCT 7981088 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTT-CCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 | || || | ||||| || ||||| ||| || ||||| || || | ||| || ||||| Sbjct 7981089 GCGAGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGG 7981148 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || ||||| || || ||||||||||| || || ||||| || | || || | || Sbjct 7981149 TGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTC 7981208 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 7981209 AACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7981259 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || ||||| || ||||| || | ||||| || || || ||||| |||||| Sbjct 7980801 ATTCCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCA 7980860 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || | | ||||| || || || || || || || || | | ||| || || | Sbjct 7980861 GCCAGGGCGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGG 7980920 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||||| || || Sbjct 7980921 GGGATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCG 7980980 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| ||||| || || || || || ||||| |||||||| Sbjct 7980981 ACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 7981030 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| ||||| || |||||||| || ||||| | || || | || || || || || Sbjct 21800201 TGTAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGTCCATCCTCCAGCTGC 21800142 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || ||||| || || || || || || || |||||||| ||||| Sbjct 21800141 TTACCAGCGAAGATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTC 21800082 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || || || | ||| || || | || ||||| || ||||||||||| ||||| Sbjct 21800081 GCCTTCACGTTGTCAATGGTGTCTG-AGCTCTCAACCTCCAGGGTAATAGTCTTGCCAGT 21800023 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 || || || || || ||||||||| Sbjct 21800022 GAGAGTCTTGACGAAAATCTGCATT 21799998 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || || || || | || || | || || Sbjct 7980591 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCCATCC 7980650 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || |||||||| || || | ||| ||||| || || || | || || ||| Sbjct 7980651 TCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTTGTCC 7980710 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||||||||||||||| || || | || || | || ||||| || ||||| || Sbjct 7980711 TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAATGGTT 7980770 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || || | ||| || ||||| || |||||| Sbjct 7980771 TTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7980803 >seq6 Length=27870862 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | || || || ||||| || || || || Sbjct 24977118 ATGCCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 24977177 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | || || |||||||| || |||||||| || || | || || ||||| Sbjct 24977178 GCGAGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGT 24977237 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || ||||| || | ||||| | || Sbjct 24977238 GGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAGGACTCA 24977297 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| ||||| || ||||| |||||||| Sbjct 24977298 ACCTCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 24977347 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || |||||||| || || |||| || || | || || Sbjct 24976908 AGCACCAGGTGCAAGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGTGTACGTCCATCC 24976967 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || | ||||| || || | ||| || || || || ||||| || || ||| Sbjct 24976968 TCGAGCTGCTTGTCTGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 24977027 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | | || | ||| || ||| | || || || || Sbjct 24977028 TGAATCTTCGCCTTCACATTGTCGATCTTGTC-CGAGGACTCGACCGCAAGAGTGATGGT 24977086 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || | || || ||||| |||||||| Sbjct 24977087 CTTTCCTGTCAAGGTCTTCACAAAGATCTGCAT 24977119 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || ||||||||||| || || |||| Sbjct 23628878 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAG 23628819 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || || | || ||||| ||||| || || || ||||| ||||| || || || || | Sbjct 23628818 CTAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGG 23628759 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || ||||| ||||||| Sbjct 23628758 GAATACCCTCTTTGTCCTGAA 23628738 >seq4 Length=30521686 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || ||||| || | ||||| | || || Sbjct 27324173 AGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCC 27324114 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || || | || || || ||||| || || || || ||| Sbjct 27324113 TCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 27324054 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | |||||| | || ||||| | || || ||| Sbjct 27324053 TGAATCTTAGCCTTCACATTGTCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTC 27323994 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || ||||||||||| Sbjct 27323993 TTGCCAGTGAGGGTCTTAACGAATATCTGCAT 27323962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151342075749144