Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq3 118 9e-22 >seq3 Length=34446443 Score = 118 bits (130), Expect = 9e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||| ||||| || || | || || | || |||| ||| | ||||||| Sbjct 24939409 ACGCCGGTGGATCCGAACCCTCCCTCTCCCCTGACGGTGGCGTCGAGGTCCTCCACCTCG 24939468 Query 5561 TCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || || | | | | | |||| ||||| |||||| || |||||||| | ||| Sbjct 24939469 GCGACCTCCGGCGTCACGATCAC-CTCGATGATCATCTGCGCGATCCGGTCGCCGGGCTT 24939527 Query 5620 TACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 || |||| ||| ||| | | |||||| || | || || || ||| |||||||| Sbjct 24939528 CACGGCGAAGTCGGTGTCGGAGTGGTTGAAGAGGATGACCCCTACCGGGCCACGGTAGTC 24939587 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGA 5733 |||||| ||||| || |||||||||||||| ||||||| | |||||| || || Sbjct 24939588 GGCGTCGATCACCCCGGCGCCCACGTCGATCGAGTGCTTCAACGCCAGCCCAGA 24939641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430034388762416