Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5 105 6e-18 seq2 95.1 1e-14 seq7 86.0 5e-12 seq6 86.0 5e-12 seq1 82.4 6e-11 >seq5 Length=26652778 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48511 CCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTC 48570 ||| | ||||| ||||| || |||||| || || ||||| ||||||| || | Sbjct 7980815 CCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCCAGGGCGCGTCC 7980874 Query 48571 GTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTT 48630 |||||| |||||||| ||| || | || || |||||||| ||| || | | ||||| Sbjct 7980875 GTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGGATGCCCTCCTT 7980934 Query 48631 GTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 |||| ||| ||| ||| | | | || ||||| | |||||| ||| | || || Sbjct 7980935 GTCCTGAATCTTCGCCTTCACATTGTCGATTGTATCAGAAGACTCGACCTCAAGCGTAAT 7980994 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| || || || |||||||||||||| Sbjct 7980995 GGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 7981030 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| | ||||| ||| ||| || |||||||||||||| || Sbjct 7981032 CCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 7981091 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA--ATTAAACGCTGCTGATCCACCG 48617 | || ||||||| || ||||| | ||| || || | |||||||| || | Sbjct 7981092 AGGGTGCGTCCGTCCTCAAGTTGCTTTGC-CCGCAAAGATGAGGCGCTGCTGGTCAGGTG 7981150 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||||||| ||| || ||||| | | || || || | ||||| Sbjct 7981151 GAATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAA 7981210 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | |||||||| || || ||||| || |||||||| ||||||||| Sbjct 7981211 CCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCATC 7981260 >seq2 Length=33962743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 || || ||| |||||| || |||||||| ||||| || ||| || | |||||||||| Sbjct 3067397 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCATCCTCCAGCT 3067454 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | | || | |||||||| ||| || | | ||||||||| || | Sbjct 3067455 GCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCT 3067514 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | ||||||| ||||| || ||||| || |||| Sbjct 3067515 TGGCCTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCGG 3067574 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | ||||| ||||| || || ||||| Sbjct 3067575 TCAGAGTCTTCACGAAGATTTGCAT 3067599 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCTCCAGCT 48581 ||||| || |||||| || |||||||| ||||| || ||| || | |||||||||| Sbjct 3068163 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTC-CTGCCATCCTCCAGCT 3068220 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | ||||||||| ||| || | | ||||| || || | Sbjct 3068221 GCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCT 3068280 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | ||||| || | |||||| ||||| || || || || |||| Sbjct 3068281 TAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGG 3068340 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | | || |||||||| ||||||||| Sbjct 3068341 TCAATGTCTTCACAAAGATCTGCATC 3068366 >seq7 Length=26200591 Score = 86.0 bits (94), Expect = 5e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| ||||||||||| |||| ||| || | | ||||| |||| Sbjct 10980380 ATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAG-CAAGGGTGCATCCTTCCTCGAGCT 10980438 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| ||| || | || | |||||||| || || | | ||||| || || | Sbjct 10980439 GCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATGCCCTCCTTATCTTGGATCT 10980498 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 || ||| | | | ||||| |||| |||||| ||| | || |||| || |||| Sbjct 10980499 TCGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGACTTGCCGG 10980558 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | ||||| |||||||| ||||||||| Sbjct 10980559 TCAGAGTCTTCACAAAGATCTGCATC 10980584 >seq6 Length=27870862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| |||||||| || | |||||||||||| Sbjct 25466363 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGGCCATCCTCCAGCTGC 25466304 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | || ||||||||| || || Sbjct 25466303 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTG 25466244 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || || || || | ||||| ||| | || ||||| || |||| Sbjct 25466243 GCCTTCACGTTGTCG--ATCGTGTCCGAGGACTCGACCTCAAGCGTGATGGTCTTGCCGG 25466186 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || || |||||||| Sbjct 25466185 TCAGGGTCTTGACGAAGATCTGCAT 25466161 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| || || || || || ||||||||||||| Sbjct 25465907 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCGTCCTCCAGCTG 25465849 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 25465848 CTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 25465789 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || || | ||||| ||| | ||| ||||| || || || Sbjct 25465788 GGCCTTCACATTGTCGATCGTGTCCGAGGACTCGACCTCAAGTGTGATGGTCTTGCCAGT 25465729 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 25465728 CAGGGTCTTGACGAAGATCTGCAT 25465705 >seq1 Length=39866532 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || |||| ||| |||||||||||||||| ||| || | Sbjct 23562467 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAA 23562408 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| ||| | | ||||||||| | ||| ||||| Sbjct 23562407 GATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGCACCTTCGCCTTGACGTT 23562348 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| | |||| ||| | || ||||| || || || || || ||||| Sbjct 23562347 CTGGATCGTGTCGCTGCTCTCCACCTCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCAC 23562288 Query 48715 AAAAATCTGCATC 48727 || ||||||||| Sbjct 23562287 GAAGATCTGCATC 23562275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421231598391818