Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 116 2e-21 seq9 113 2e-20 seq1 113 2e-20 seq10 111 8e-20 seq7 111 8e-20 seq5 111 8e-20 seq2 105 3e-18 seq4 104 1e-17 seq3 104 1e-17 seq11 100 1e-16 >seq8 Length=25958679 Score = 116 bits (128), Expect = 2e-21 Identities = 84/95 (88%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||||| || |||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 22110969 AATAAAAAAT-AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 22110911 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 |||||||| |||| |||||||||| |||| ||||| Sbjct 22110910 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTCGA 22110876 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 18931374 TAAAAAATTTTAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 18931433 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 18931434 CGCTCTAACCAGCTGAGCTAATAGGCC 18931460 >seq9 Length=20482102 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 16002861 AAAAAATAGAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 16002802 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 16002801 GCTCTAACCAGCTGAGCTAATAGGCC 16002776 Score = 111 bits (122), Expect = 8e-20 Identities = 86/102 (84%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||| | | || |||||||| || ||| ||||||||| | | |||||||| |||||||| Sbjct 12472114 AAAAAAAAAACTAATAAAACAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTC 12472173 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| |||||||||| |||| Sbjct 12472174 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 12472215 >seq1 Length=39866532 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 39654137 AACAAAAAATAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 39654196 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 39654197 GACGCTCTAACCAGCTGAGCTAATAGGCC 39654225 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| || ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 23789000 AAATAAGAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 23789059 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTC 11532 ||||| |||| |||||||||| |||| || Sbjct 23789060 GCTCTAACCAGCTGAGCTAATAGGCCATC 23789088 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 32142672 AAAAAAGAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 32142613 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 32142612 GCTCTAACCAGCTGAGCTAATAGGCC 32142587 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 36145846 AATAAAAACAAAAGGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 36145787 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 36145786 GACGCTCTAACCAGCTGAGCTAATAGGCC 36145758 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 32142578 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 32142519 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 32142518 TGAGCTAATAGGCC 32142505 >seq10 Length=20731201 Score = 111 bits (122), Expect = 8e-20 Identities = 78/89 (88%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 15577774 AAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 15577717 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCG 11533 |||| |||| |||||||||| |||||||| Sbjct 15577716 CTCTAACCAGCTGAGCTAATAGGCCGTCG 15577688 >seq7 Length=26200591 Score = 111 bits (122), Expect = 8e-20 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 22985950 AAAAATAAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 22985891 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| |||| |||||||||| |||| || Sbjct 22985890 CTCTAACCAGCTGAGCTAATAGGCCTTC 22985863 >seq5 Length=26652778 Score = 111 bits (122), Expect = 8e-20 Identities = 80/92 (87%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11439 TTAATAAAAAATC-AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| |||||| ||||||||||||| | | |||||||| |||||||||||||||||| Sbjct 20648709 TTAAAAAAAAAGATAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAG 20648768 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||| |||||||||| |||| Sbjct 20648769 CACGACGCTCTAACCAGCTGAGCTAATAGGCC 20648800 >seq2 Length=33962743 Score = 105 bits (116), Expect = 3e-18 Identities = 78/91 (86%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||| Sbjct 21246680 AATAGAAAATTTAAAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 21246621 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| |||||||||| |||| Sbjct 21246620 ACGACGCTCTAACCAGCTGAGCTAATAGGCC 21246590 >seq4 Length=30521686 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 19479814 AAAAAAAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 19479755 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 19479754 GCTCTAACCAGCTGAGCTAATAGGCC 19479729 Score = 104 bits (114), Expect = 1e-17 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 || |||| || | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 21436969 AATAAATAAATAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 21437028 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||| |||| |||||||||| ||||| Sbjct 21437029 CGCTCTAACCAGCTGAGCTAATAGGCCG 21437056 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11447 AAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||| ||||| ||||||||||| | |||||||| |||||||||||||||||| |||||| Sbjct 21625346 AAAACAAATAATGGCCCATGAAGGTCTCGAACCTGCGACCTTCGCGTTATTAGTACGACG 21625287 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 21625286 CTCTAACCAGCTGAGCTAATAGGCC 21625262 Score = 96.9 bits (106), Expect = 2e-15 Identities = 70/81 (86%), Gaps = 3/81 (4%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 20940171 AAAAAATTA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 20940227 Query 11504 GCTCTRACCAACTGAGCTAAT 11524 ||||| |||| |||||||||| Sbjct 20940228 GCTCTAACCAGCTGAGCTAAT 20940248 >seq3 Length=34446443 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 14342349 AAAAA--AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 14342406 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 14342407 CTCTAACCAGCTGAGCTAATAGGCC 14342431 >seq11 Length=27785585 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 181172 AAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 181113 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 181112 AGCTGAGCTAATAGGCC 181096 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261479032324168