Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq8 457 3e-124 seq10 327 3e-85 seq12 194 5e-45 seq4 86.0 2e-12 >seq8 Length=25958679 Score = 457 bits (506), Expect = 3e-124 Identities = 614/847 (72%), Gaps = 8/847 (1%) Strand=Plus/Plus Query 19431 CGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTT 19490 ||||||| ||||| || | ||| | ||||||||||||||||| ||||| || | || Sbjct 20127934 CGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 20127993 Query 19491 CCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGAT 19550 || | || || || ||| |||||||||| || || |||||||| | || | ||| Sbjct 20127994 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 20128053 Query 19551 GAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTA 19610 |||||||||||||| |||||||| ||| | || |||| | ||||||||| | || ||| Sbjct 20128054 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 20128113 Query 19611 GCAG--CATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGA 19668 || |||| | ||| | |||||||||| || | | | || ||| | || |||| Sbjct 20128114 GCTTGTCATATG--GGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 20128171 Query 19669 TATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGT-TTACCCA 19727 | || |||||| |||| || | | || ||| |||||| ||||| | |||||| Sbjct 20128172 TTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGT-TTTCTTGAATTACCCT 20128230 Query 19728 TTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTT 19787 |||| ||||| ||||| ||||||||||||| | || || ||||||||||| |||||| Sbjct 20128231 ATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTT 20128290 Query 19788 ATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTT 19847 ||| | |||||||| ||||| || || |||||||||||||| || |||||| | ||||| Sbjct 20128291 ATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 20128350 Query 19848 GCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCG 19907 ||||| |||||||| || || || ||| ||||||||| || ||||| || || Sbjct 20128351 GCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGT 20128410 Query 19908 ATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGAT 19967 | |||| |||||| ||||| | | ||| || | || || | || || ||||| Sbjct 20128411 TTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAG 20128470 Query 19968 GAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATAT 20027 |||||||| ||||||||||| || || || || || ||||| |||| || || |||||| Sbjct 20128471 GAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATAT 20128530 Query 20028 GCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTA-CTTTCCCCGTGGTTGG 20086 ||| ||| || || |||||||| ||||| ||| |||||| || ||| || || || || Sbjct 20128531 GCTAGTTTTAACAACTCTCGTTCGTTACACTTC-TTCTTGGTAGCTTGGCCTGTAGTAGG 20128589 Query 20087 CATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTT 20146 || ||| | || | | || || | |||||||||||||| || || || || || || Sbjct 20128590 GATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTT 20128649 Query 20147 TAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAA 20206 ||||| || ||||||||| | | || | || || ||||||||| | | || Sbjct 20128650 CAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAA 20128709 Query 20207 TAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGA 20266 | ||||| || || | ||||| |||||||| || |||||||| |||||||| || || Sbjct 20128710 CCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 20128769 Query 20267 TTTAGCT 20273 ||||| Sbjct 20128770 CCTAGCT 20128776 >seq10 Length=20731201 Score = 327 bits (362), Expect = 3e-85 Identities = 436/602 (72%), Gaps = 14/602 (2%) Strand=Plus/Plus Query 19674 GTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGG 19732 || |||||| |||| || | |||| ||| |||||| ||||| | ||||||| |||| Sbjct 18975652 GTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGG 18975710 Query 19733 GCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTT 19792 ||||| ||||| ||||||||||||| | || || ||||||||||| ||||||||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 19793 CGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGG 19852 |||||||| ||||| || || ||||||||||||| || |||||| | ||||| ||||| Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 19853 CGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCAT 19912 |||||||| || || || || ||||||||| || ||||| || || | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 19913 CAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAGA 19972 | |||||| ||||| | | ||| || | || || | || || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 19973 GACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTC 20032 ||| ||||||||||| || || || || || ||||| |||| || || ||||||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 20033 TTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATG 20092 ||| || || ||||| |||||||| ||||| | ||| ||| || || || || || || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 20093 GCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCA 20152 | | | | | || || | |||||||||||||| || || || || || || ||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 20153 GTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAG 20211 | ||||||||| | ||| |||| || ||||||||| | | || | | Sbjct 18976131 ATATGTAGTTGATAGCCAA-------TTAAT----ACTTGGGCTGATATCATCAACCGTG 18976179 Query 20212 CTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAG 20271 |||| || || | ||||| |||||||| || |||||||| |||||||| || || ||| Sbjct 18976180 CTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAG 18976239 Query 20272 CT 20273 || Sbjct 18976240 CT 18976241 Score = 170 bits (188), Expect = 6e-38 Identities = 162/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 19721 TTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTT 19780 |||||| |||| ||||| ||||| ||||||||||||| | || || ||||||||||| Sbjct 9553657 TTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 9553598 Query 19781 TAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCT 19840 ||||||||| | |||||||| ||||| || || |||||||||||||| || |||||| | Sbjct 9553597 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 9553538 Query 19841 CGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTAC 19900 ||||| ||||| |||||||| || || || ||| ||||||||| || ||||| || Sbjct 9553537 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 9553478 Query 19901 TTCCTCGATCATCAAGGAAACAACTGA 19927 || | |||| |||||| ||||| Sbjct 9553477 CTCTAGTTTGATCAGGGAAACCACTGA 9553451 >seq12 Length=23561512 Score = 194 bits (214), Expect = 5e-45 Identities = 227/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || ||||| ||||| ||||| | || |||||||| || | ||||| ||| Sbjct 9700324 TGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 9700383 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| ||||||| ||||| || || || | |||| Sbjct 9700384 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGCAGAT 9700443 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || ||||||| ||||| || | ||| | ||||||||||||||||| ||| Sbjct 9700444 ATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCT 9700503 Query 19479 GG-AGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGC 19537 || | || || |||| | || | ||| || ||| |||||||||| | || |||||||| Sbjct 9700504 GGTACCATTA-TTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAATTTGGGAAGC 9700562 Query 19538 CGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTT 19597 | || | ||||||||||||||||| |||||||| ||| | || |||| | ||||| Sbjct 9700563 TGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 9700622 Query 19598 CTTA 19601 |||| Sbjct 9700623 CTTA 9700626 >seq4 Length=30521686 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATAC 19562 || || ||| |||||||||| || || |||||||| | || | ||||||||||||||| Sbjct 7243080 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 7243139 Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGC 19612 || || ||||| ||| | || |||| | ||||||||| | || ||||| Sbjct 7243140 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGC 7243189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144435051198408