Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq8 462 4e-125 seq10 338 1e-87 seq12 150 3e-31 >seq8 Length=25958679 Score = 462 bits (512), Expect = 4e-125 Identities = 610/844 (72%), Gaps = 4/844 (0%) Strand=Plus/Plus Query 211711 CGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 211770 ||||| | || |||||| || | || || ||||| || ||||||||||| || || Sbjct 20127934 CGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 20127993 Query 211771 CCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGAT 211830 || |||| || ||||| || ||||| || || || |||||||| ||| || ||||| Sbjct 20127994 CCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGAT 20128053 Query 211831 GAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAAT- 211889 |||||| | |||||||| |||||||| || | | | | |||||| | | || | Sbjct 20128054 GAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 20128113 Query 211890 -CTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGA 211948 || |||| |||| | |||||||||| | |||| | |||||||||||||||| Sbjct 20128114 GCTTGTCATA--TGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGA 20128171 Query 211949 TCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCAT 212008 | |||||| |||||||| ||||| | || ||| ||||| ||| | |||||| Sbjct 20128172 TTGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTA 20128231 Query 212009 TCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCA 212068 | ||||| || ||||| || |||||||||||||| ||||| || || |||||||| | Sbjct 20128232 TTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTA 20128291 Query 212069 TGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTG 212128 || | |||||||| ||||| ||||||||||||||||| ||||| || ||| |||||| | Sbjct 20128292 TGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 20128351 Query 212129 CAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCAC 212188 | ||| | ||||| || | ||||| ||||||||| ||||| | || || ||| Sbjct 20128352 CTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTT 20128411 Query 212189 TTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAG 212248 | ||| | |||||||||| || || || | ||||||| || || ||||| | Sbjct 20128412 TGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGG 20128471 Query 212249 AAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATG 212308 ||||||| ||||| || || || || ||||| || || || || | |||||||| |||| Sbjct 20128472 AAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATG 20128531 Query 212309 CATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTG 212368 | || |||||| | |||||||||||| | | | | |||||||| | | Sbjct 20128532 CTAGTTTTAACAACTCTCGTTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGA 20128591 Query 212369 TATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCA 212428 | ||||| || || | ||||| | || ||||| ||||| ||||| |||||||| |||| Sbjct 20128592 TTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCA 20128651 Query 212429 ACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACA 212488 ||||||| || |||||| |||| ||| || |||||||| |||| | | ||| Sbjct 20128652 ACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACC 20128711 Query 212489 GAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACT 212548 | || || |||||||||||||| ||||||||| | ||||| ||||||||||| || ||| Sbjct 20128712 GTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACC 20128771 Query 212549 TAGC 212552 |||| Sbjct 20128772 TAGC 20128775 >seq10 Length=20731201 Score = 338 bits (374), Expect = 1e-87 Identities = 435/600 (73%), Gaps = 10/600 (2%) Strand=Plus/Plus Query 211953 TGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGG 212012 |||||| |||||||| ||||| |||| ||| ||||| ||| | ||||||| | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 212013 TCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTT 212072 ||| || |||| || |||||||||||||| ||||| || || |||||||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 212073 CGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGG 212132 |||||||| ||||| ||||||||||||||||| | ||| || ||| |||||| || || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 212133 TATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTAT 212192 | | ||||| || | |||| ||||||||| ||||| | || || ||| | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 212193 CCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGA 212252 | | |||||||||| || || || | ||||||| || || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 212253 GACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATC 212312 ||| ||||| || || || || ||||| || || || || | |||||||| ||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 212313 ATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATG 212372 || |||||| || ||||||||||||| | || | |||||||| | | | || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 212373 GTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCA 212432 ||| | || | ||||| | || ||||| ||||| ||||| |||||||| |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 212433 ATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGC 212492 || || |||||| || || || |||||||| |||| | | ||| | || Sbjct 18976131 ATATGTAGTTGAT-----AGCCAA-----TTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 212493 AAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 || |||||||||||||| ||||||||| | ||||| ||||||||||| || ||| |||| Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Score = 156 bits (172), Expect = 7e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 212001 TTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATT 212060 |||||| | ||||| || ||||| || |||||||||||||| ||||| || || || Sbjct 9553657 TTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTT 9553598 Query 212061 CAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGC 212120 |||||| ||| | |||||||| ||||| ||||||||||||||||| ||||| || ||| Sbjct 9553597 CAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTT 9553538 Query 212121 AGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTAC 212180 |||||| || ||| | ||||| || | ||||| ||||||||| ||||| | || || Sbjct 9553537 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 9553478 Query 212181 ATCTTCACTTATCCGTGAAACCACTG 212206 ||| | ||| | |||||||||| Sbjct 9553477 CTCTAGTTTGATCAGGGAAACCACTG 9553452 >seq12 Length=23561512 Score = 150 bits (166), Expect = 3e-31 Identities = 210/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 |||||| ||||| |||| | || | || ||| | | || |||| |||||||||||| | Sbjct 9700315 TTCTGCAACTGGATAACTAGCACCGAA-AACCGTCTTTACATTGGATGGTTTGGTGTTTT 9700373 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || |||||||| || | Sbjct 9700374 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCC 9700432 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| | ||||| || || || ||||| | || |||||| || | || || |||| Sbjct 9700433 CTCCAGCAGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACA 9700492 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||||||| | || |||| |||| | || ||||| || ||||| || | | Sbjct 9700493 ATATTATCTCTGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAA 9700552 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 | |||||||| ||| || ||||||||||| | |||||||| |||||||| Sbjct 9700553 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTA 9700601 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 212353 TGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTA 212412 |||||||| | | | ||||| || || | ||||| | || ||||| ||||| ||| Sbjct 9700734 TGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTA 9700793 Query 212413 AATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGG 212472 || |||||||| |||||| |||| || |||||| |||| ||| || ||||||| Sbjct 9700794 AACGGATTCAATTTCAACTAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGG 9700853 Query 212473 GGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACAC 212532 | |||| | | || | || || |||||||||| ||| || |||||| | ||| | ||| Sbjct 9700854 GCTGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACTCAC 9700913 Query 212533 AACTTCCCACTTGACTTAGC 212552 |||||||| || ||| |||| Sbjct 9700914 AACTTCCCTCTAGACCTAGC 9700933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807516659428080