Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9 131 1e-25 seq2 96.9 2e-15 seq4 87.8 1e-12 >seq9 Length=20482102 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 667 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 608 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 607 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 573 >seq2 Length=33962743 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 26801808 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 26801749 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 26801748 GCCTGTATTTAGCCTT 26801733 >seq4 Length=30521686 Score = 87.8 bits (96), Expect = 1e-12 Identities = 72/88 (82%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| || ||| ||||||||||||| ||||||||| |||| || |||||||| Sbjct 13982995 AAGCCCATTATCTTCGCTGTGGTTTCGCGGGATAGTAGACAGGGACAGTGGGAATCTCGT 13982936 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAG 25984 |||||| |||||| |||||| ||||||| Sbjct 13982935 TAATCCATTCATGGGCGTCATTAATTAG 13982908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334931614278758