Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 122 8e-23 seq6 111 1e-19 seq4 109 5e-19 seq2 98.7 9e-16 >seq5 Length=26652778 Score = 122 bits (134), Expect = 8e-23 Identities = 168/231 (73%), Gaps = 7/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||| || | || || ||||| ||| Sbjct 7981259 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATAACCCTAGAGGTTGAGTCCTCT 7981200 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || || | ||| ||||| || || |||||||||||| Sbjct 7981199 GACACGATTGA--CAATGTCAAGGCCAAGATTCAG-GACAAGGAGGGAATTCCACCTGAC 7981143 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAA-CAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || ||||| |||||| ||| | || || | ||||| | | ||||| Sbjct 7981142 CAGCAGCGCCTCATCTTTGCGGGCAAAGCAACTTGAGGACGGACGCACCCTCGCAGATTA 7981083 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||||| ||||| || || | ||||| ||||| || ||||| Sbjct 7981082 CAACATTCAGAAAGAGTCCACCCTTCACCTTGTGCTTAGGCTGAGGGGAGG 7981032 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || |||| || | || || ||||| || Sbjct 21799770 AATGCAGATCTTCGTGAAGACCCTTACTGGCAAGACCATTACGCTTGAGGTTGAGTCATC 21799829 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| || ||| ||||| || || ||||| || || || Sbjct 21799830 AGACACGATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 21799889 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||||||||||||||| || | || |||| | || | | || ||||| Sbjct 21799890 GCAGCGTCTTATTTTTGCCGGCAAGCAGCTGGAGGATGGCAGGACCCTCGCTGACTACAA 21799949 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| || || | || || | ||||| || |||| Sbjct 21799950 CATCCAGAAGGAGTCCACCCTTCACCTTGTTCTGCGCCTAAGGGGTGGAA 21799999 >seq6 Length=27870862 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| |||| || ||||| ||| Sbjct 24977347 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCT 24977288 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || ||||| | || | ||| ||||| || || |||||||||||||| Sbjct 24977287 GATACAATTGACAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGCATTCCACCTGACCA 24977229 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | || ||||| ||||| ||| |||| |||| ||||| | | |||||||| Sbjct 24977228 GCAACGTCTCATCTTTGCTGGCAAGCAACTAGAGGATGGCCGCACCCTCGCGGATTACAA 24977169 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || ||||| || || | || || | || || ||||| Sbjct 24977168 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTTCGCCTCAGGGGAGG 24977121 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || || ||||||||| Sbjct 25465021 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 25465080 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| || || || || || |||| Sbjct 25465081 GACACCATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 25465138 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || || ||||| || | || |||| ||||| ||| ||| |||| Sbjct 25465139 AGCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGACTACA 25465198 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || || || || || || | ||||| ||||| || ||||| Sbjct 25465199 ACATCCAGAAGGAGTCTACCCTCCACCTTGTGCTCAGGCTCAGGGGAGG 25465247 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || ||||||| | || || ||||||||| Sbjct 25465249 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTCGAGTCGTCT 25465308 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| || || || || || |||| Sbjct 25465309 GACACCATTGA--CAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACC 25465366 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || || |||||||| || | || |||| ||||| | | || |||| Sbjct 25465367 AGCAGCGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCTGACTACA 25465426 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || || ||||| || || | ||||| ||||| || ||||| Sbjct 25465427 ACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCAGGCTCAGGGGAGG 25465475 >seq4 Length=30521686 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | || || ||||||||| Sbjct 27324646 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGTCGTCT 27324705 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || |||||||| ||||| Sbjct 27324706 GACACGATCGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCACCAGACCAG 27324765 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || | || |||| |||||| | | |||||||| Sbjct 27324766 CAGCGCCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTTGCAGATTACAAC 27324825 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 27324826 ATCCAGAAGGAGTCCACCCTGCA 27324848 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || |||| || | || || ||||| || Sbjct 27324190 ATGCAAATATTCGTGAAGACCCTCACCGGCAAGACCATTACCCTGGAGGTCGAGTCCTCC 27324249 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || ||| ||||| || || || ||||| ||||| Sbjct 27324250 GACACGATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 27324309 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || |||| ||||| | | || ||||| Sbjct 27324310 CAGCGTCTCATCTTTGCTGGGAAGCAGCTCGAGGATGGCCGCACCCTTGCAGACTACAAC 27324369 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || ||||| |||||||| || || Sbjct 27324370 ATCCAAAAGGAATCCACCCTGCA 27324392 >seq2 Length=33962743 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || ||||||| |||| ||||| || ||| Sbjct 3067827 ATGCAGATCTTTGTCAAGACACTGACCGGCAAGACCATCACCCTCGAGGTGGAATCTTCT 3067768 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| || ||||| Sbjct 3067767 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3067708 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | | || | | || ||||| Sbjct 3067707 CAGCGTCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGCAGGACCCTTGCTGACTACAAC 3067648 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || | || || | || || ||||| Sbjct 3067647 ATCCAGAAGGAGTCAACGCTTCACCTTGTCCTCCGTCTCAGGGGAGG 3067601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307836435670