Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6 425 1e-113 >seq6 Length=27870862 Score = 425 bits (470), Expect = 1e-113 Identities = 541/734 (74%), Gaps = 28/734 (4%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || |||||||| ||| ||||||||||| Sbjct 7611045 CTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 7610986 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||||||| ||||||||| |||||||| ||||| |||||| Sbjct 7610985 TCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGATTCCAGATCGCCATCGAGAAC 7610926 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | || ||||||| || || |||| Sbjct 7610925 ATCCACTCCGAGATGTACTCGCTGCTGCTCGAGACCTACATCCGCGACGGCGCCGAGAAG 7610866 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG-AAGGCGGACTGGGC 42661 || |||||||| ||||| || || | ||| || | | ||||| |||||||| Sbjct 7610865 GACCGGCTGTTCCGCGCCATCGACACCGT-CCCGGCCGTGCGCCGCAAGGCCGACTGGGC 7610807 Query 42662 GCTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | ||||||||| | ||| ||| |||| |||| | || || ||||| || Sbjct 7610806 CATGCGCTGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGCCTCGTCGCCTTCGCCT 7610751 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 ||||||||| ||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 7610750 GCGTCGAGGGGATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGG 7610691 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 | ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| Sbjct 7610690 GGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACT 7610631 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| ||| ||| Sbjct 7610630 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGGCGCG 7610576 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 ||||| | ||| || | || ||||| || ||||||| ||||||| || | |||| Sbjct 7610575 CGTCCGCGAGATCGTCGCCGACGCCGTCGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 7610516 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || |||||||||||| |||||||||| || |||||||| ||| |||||| Sbjct 7610515 CCCCGTCGCGCTCGTCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGC 7610456 Query 43019 CGACCATCTCCTGTGCCAGATGGGTCTCAGCCGC------CTCTACAAC-ACGCCGTGCC 43071 ||||| ||||| |||| ||| || || | |||||| |||| || Sbjct 7610455 CGACCGCCTCCT------CATGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCC-AACC 7610403 Query 43072 CCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 43131 ||||||||| |||||| ||| || || |||||||||||||||| ||||||||||||| Sbjct 7610402 CCTTCGACTGGATGGAGCTCATATCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCG 7610343 Query 43132 TCGCCGACTACCAG 43145 ||| |||||||||| Sbjct 7610342 TCGGCGACTACCAG 7610329 Score = 379 bits (420), Expect = 4e-100 Identities = 530/729 (73%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| ||||| || ||||| || |||||||| ||| ||||||||||| Sbjct 1266983 CTCGCCTTCTTCGCGGCCTCCGATGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATG 1267042 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 || |||||| | ||||| ||| |||||||||||||||||| ||||| |||||| Sbjct 1267043 TCCGACGTGCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAAC 1267102 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| ||| ||||| | |||||| | |||||||||| || ||||||| Sbjct 1267103 ATCCACTCGGAGATGTACTCGCTTCTGCTCGAGACGTACATCCGCGACGACGTCGAGAAG 1267162 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 || | || ||| ||||| || || | ||| | | ||||| |||||||| Sbjct 1267163 GACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCGACTGGGCC 1267222 Query 42663 CTCAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGC 42721 | |||||||| | ||| ||| |||| |||| |||| || ||||| || Sbjct 1267223 ATGCGATGGATCGACGGCGGCGAGCGC----TTCGCCGAGCGGCTCGTCGCCTTCGCCTG 1267278 Query 42722 CGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGG 42780 ||||||||| |||||||||||||| | ||| | ||||||||||||||||| || || Sbjct 1267279 CGTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCGCCATCTTCTGGCTCAAGAAGCGCGG 1267338 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATA 42840 || ||||| || ||||||||||| ||||| |||||| | | |||||||| || || Sbjct 1267339 ACTC-ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCACT 1267397 Query 42841 GGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCG 42898 | ||||| ||||||||||| | ||| || |||| | |||| ||||| || || Sbjct 1267398 GCGACTTCGCCTGCCTCCTCT--ACGA-CCTCCTCCGCGGCAAG--CTCGACGAGTCACG 1267452 Query 42899 GGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCT 42958 |||| || ||| || | || |||||||| ||||||| ||||||| || | |||| Sbjct 1267453 CGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCT 1267512 Query 42959 GCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGC 43018 ||||| | || ||||| |||||| ||| |||||| || |||||||| ||| |||||| Sbjct 1267513 CCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGC 1267572 Query 43019 CGACCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAAC-ACGCCGTGCCCCTTC 43076 ||||| || || || | |||| || | | |||||| |||| ||| ||| Sbjct 1267573 CGACCGGCTGCTCATGGCGCTCGGGTGCAAGAAG-ATGTACAACGTCGCC-AACCCGTTC 1267630 Query 43077 GACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCC 43136 |||| |||||| |||||| || |||||||||||||||| |||||||||||||||| | Sbjct 1267631 GACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGC 1267690 Query 43137 GACTACCAG 43145 ||||||||| Sbjct 1267691 GACTACCAG 1267699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944294131411680