Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5 105 5e-18 seq2 96.9 3e-15 seq1 87.8 1e-12 seq6 86.0 5e-12 seq9 82.4 6e-11 seq3 82.4 6e-11 >seq5 Length=26652778 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || | ||| ||||||||| |||||||||||||| || || Sbjct 7980585 AGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGG 7980644 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| |||||||||||||||||| || | |||||| Sbjct 7980645 CCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCC 7980704 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | | | ||||||| | || | | || | || || || | || Sbjct 7980705 TTGTCC-TGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGT 7980763 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || ||||| ||||| | ||| || ||||||||||||||| Sbjct 7980764 AATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7980803 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||| ||||| || ||||| ||| ||| |||||||||||||||||||| Sbjct 7981032 CCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 7981091 Query 33961 AATTGTCGCTCGTCGTCCAATTGC-TTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || |||| || | |||| ||||| ||||| || ||||||||||| || || Sbjct 7981092 AGGGTGCGTCCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGG 7981151 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | | ||| |||||| ||| || ||| | || | || | |||| || || Sbjct 7981152 AATTCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATC---GTGTCAGAGGACTC 7981208 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| || || || || ||||| ||||||||||| ||||| Sbjct 7981209 AACCTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7981259 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || ||||| ||| ||||||||| |||||||| || || Sbjct 21799769 CCTCCCCTTAGGCGGAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 21799711 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | |||||||| ||||| ||||| |||||||| ||| | Sbjct 21799710 AAGGGTC-CTACCATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGG 21799652 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| || ||| ||||| | | | |||||| ||| || Sbjct 21799651 GAATCCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA 21799592 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || || | || || |||||||||||||| Sbjct 21799591 CCTCAAGGGTGATAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21799543 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||||| || ||||| || |||||| || || ||||| || ||| Sbjct 7980804 CCACCCCTGAGCCTGAGCACTAGGTGAAGGGTAGACTCCTTGTGGATATTGTAGTCAGCC 7980863 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || | ||||||||| ||| || Sbjct 7980864 AGGGCGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAAGCGCTGCTGGTCCCGGGGG 7980923 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || ||| |||||| ||| || ||| || | || | |||||| ||| ||| Sbjct 7980924 ATGCCCTCCTTGTCCTGAATCTTCGCCTTCACATTG---TCGATTGTATCAGAAGACTCG 7980980 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| || || |||||||| || || || ||||| || ||||| Sbjct 7980981 ACCTCAAGCGTAATGGTCTTTCCGGTCAGGGTCTTGACAAAAATCTGCAT 7981030 >seq2 Length=33962743 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || || || || || |||||||| ||||||||| |||||||| || || Sbjct 3067601 CCTCCCCTGAGACGGAGGACAAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCAGC- 3067659 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || |||| || | |||||||||||||| || || |||||||| ||| | Sbjct 3067660 AAGGGTC-CTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGGG 3067718 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | || ||| |||||| || || ||| | | | | |||| |||||| Sbjct 3067719 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGATTCCA 3067778 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| || || || || ||||| ||||| || |||||||| ||||| Sbjct 3067779 CCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 3067827 >seq1 Length=39866532 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || |||| ||| Sbjct 23562493 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGC 23562434 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || || || |||||||| ||| ||| | | ||| Sbjct 23562433 CCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCC 23562374 Query 34030 TTGTCC 34035 |||||| Sbjct 23562373 TTGTCC 23562368 >seq6 Length=27870862 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| ||| ||||||||| |||||||| || || Sbjct 25465931 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC- 25465873 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||||||||| || || || |||||||| ||| || Sbjct 25465872 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGG 25465813 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 25465812 GATGCCCTCCTTGTCC 25465797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || ||||| ||||| ||| ||||||||| |||||||| || ||| Sbjct 25466387 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 25466328 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| ||||||||||| || || ||||||||||| ||| || Sbjct 25466327 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 25466268 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 25466267 ATACCCTCCTTGTCC 25466253 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| ||||| || || || ||| |||||||| |||||||| || || Sbjct 25465704 ACCTCCCCTGAGCCTAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGC 25465645 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || |||| |||| ||||||||||| || || || |||||||| ||| | Sbjct 25465644 -AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGG 25465586 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 25465585 GGATGCCCTCCTTGTCC 25465569 >seq9 Length=20482102 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| || |||| ||||| || |||||||||||||||||| || ||| Sbjct 12975596 CCACCCCTGAGCCTGAGGACCAAGTGAAGAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 12975537 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | ||| | || |||| ||||||||||| ||||||| ||||| ||||| Sbjct 12975536 AGTGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAATATCAAACGCTGTTGATC 12975484 >seq3 Length=34446443 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 8006126 AGGCGAAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 8006067 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| ||||| ||||| || || ||||||||||| ||| Sbjct 8006066 CCATCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCC 8006022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397043923942036