Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 143 6e-29 seq5 140 8e-28 seq1 140 8e-28 seq4 127 5e-24 seq2 125 2e-23 seq7 116 9e-21 seq9 89.7 1e-12 >seq6 Length=27870862 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| ||||| || || || | ||| ||| || ||||| || |||||||| Sbjct 25465703 CCTCCCCTGAGCCTAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGCA 25465644 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || ||| Sbjct 25465643 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 25465584 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || || || || Sbjct 25465583 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACC 25465524 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 25465523 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 25465477 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || || || || |||| ||| || || ||||| || |||||||| Sbjct 25465931 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 25465872 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || ||| Sbjct 25465871 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 25465812 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || ||||| || || || | || || || || Sbjct 25465811 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCCGAGGACTCGACC 25465752 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||||||||| |||||||| Sbjct 25465751 TCAAGTGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 25465705 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | ||| || || ||||| || || || Sbjct 25466618 TGGCCACCACGGAGGCGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCC 25466559 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 || || ||||| || || || | || || || || |||||||||||||| || Sbjct 25466558 GCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGG 25466499 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| ||||| |||||||| || |||| ||| ||| || Sbjct 25466498 GGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCA 25466439 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 25466438 ACCTCAAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 25466389 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| || || || || |||| ||| || || ||||| || ||||| || Sbjct 25466387 CCACCCCTGAGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 25466328 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 25466327 AAGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 25466268 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || |||||||| || || | || || || || Sbjct 25466267 ATACCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATCGTGTCCGAGGACTCGACC 25466208 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| |||||||| ||||||||||| |||||||| Sbjct 25466207 TCAAGCGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 25466161 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || | ||| || || || || || | ||| || || ||||| || ||||| || Sbjct 25465475 CCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 25465416 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| |||||||| || |||||| Sbjct 25465415 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGG---TCTGGG 25465359 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || || || || | || ||| || Sbjct 25465358 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGACGACTCG 25465299 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 25465298 ACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 25465249 Score = 102 bits (112), Expect = 2e-16 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| | ||| ||||||| || || ||||| ||||| || || || || ||| Sbjct 7610501 TCGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCA 7610442 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAAT-TCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||| ||||| | |||| ||||||| ||| || ||||||| || ||||| || Sbjct 7610441 TGGCGCTCGGCTGCAAGAAGATGTACAACGTCGCC-AACCCCTTCGACTGGATGGAGCTC 7610383 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || || | || ||||| ||||||||||| ||||| ||| ||||||| || Sbjct 7610382 ATATCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 7610330 Score = 93.3 bits (102), Expect = 1e-13 Identities = 126/173 (73%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| | ||| ||||||| || || ||||| ||||| || || || | ||| Sbjct 1267527 TCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGGCTGCTCA 1267586 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAAT-TCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 ||| ||||| | |||| ||||||| ||| || || |||| || ||||| || Sbjct 1267587 TGGCGCTCGGGTGCAAGAAGATGTACAACGTCGCC-AACCCGTTCGACTGGATGGAGCTC 1267645 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || || | || ||||| ||||||||||| ||||| ||| ||||||| || Sbjct 1267646 ATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 1267698 >seq5 Length=26652778 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || ||||| || | ||| || || ||||| || ||||||||| Sbjct 3217390 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3217331 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||| || ||||| || ||| Sbjct 3217330 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 3217271 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || |||||||| || || | || || || || Sbjct 3217270 ATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 3217211 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| |||||||| ||||| ||||| ||||| |||||||| Sbjct 3217210 TCCAGCGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 3217164 Score = 118 bits (130), Expect = 3e-21 Identities = 146/197 (74%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||||||| || || || ||||| | || || || |||||| Sbjct 21800417 TCCTTCTGAATGTTGTAGTCGGCGAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCGAAG 21800358 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| ||||| || |||||| || ||||| || |||||||| || || ||||| Sbjct 21800357 ATCAGGCGCTGCTGG---TCTGGGGGAATACCTTCCTTGTCCTGGATCTTAGCCTTCACA 21800301 Query 288400 TTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | |||| ||| || || || || || || ||||| || || |||||| Sbjct 21800300 TTGTCGATGGTATCGGAGCTC---TCAACCTCCAGAGTAATGGTCTTGCCAGTAAGAGTC 21800244 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 21800243 TTGACGAAGATCTGCAT 21800227 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || |||||||| || |||||||| || || | || || || |||||| Sbjct 21800189 TCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGTCCATCCTCCAGCTGCTTACCAGCGAAG 21800130 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || ||||| || || ||||||||||| ||||| |||||||| Sbjct 21800129 ATGAGTCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTTG 21800070 Query 288403 TCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || |||| || || || || || || ||||| || || ||||||||| Sbjct 21800069 TCAATGGTGTCTGAGCTC---TCAACCTCCAGGGTAATAGTCTTGCCAGTGAGAGTCTTG 21800013 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 21800012 ACGAAAATCTGCATT 21799998 Score = 104 bits (114), Expect = 6e-17 Identities = 155/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315 || ||||| || || |||| ||| ||||| || || || || || ||||| |||||| Sbjct 7981041 AGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGT 7981100 Query 288316 CCGTCTTCTAATTG-TTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||||| || | ||| ||| || || ||||| || ||||| || | ||| ||||| || Sbjct 7981101 CCGTCCTCAAGTTGCTTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATTCCCTC 7981160 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 || ||||| || || || || || || || || | || || || || || || || Sbjct 7981161 CTTGTCCTGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAACCTCTAGGGT 7981220 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || ||||| || || |||||||| Sbjct 7981221 TATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 7981259 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || || |||| ||| || || ||||| || ||||| || || || | || || Sbjct 21799754 AGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTACCATCC 21799695 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | || || || || |||||||||||||| || || ||| || || || || Sbjct 21799694 TCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTG---GTCCGGGGGAATCCCCTCCTTG 21799638 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 |||||||| || || || ||||| || |||| ||| || || || || || ||||| Sbjct 21799637 TCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATA 21799578 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||| |||||||| || || ||||| Sbjct 21799577 GTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 21799543 Score = 93.3 bits (102), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | || || || || | ||| || || ||||| || || || || Sbjct 7980576 CCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCT 7980635 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || || || | || || || || |||||||| ||||| || ||| ||| Sbjct 7980636 AAGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTG---ATCCGGG 7980692 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || | || || ||||| || || ||||| ||||| || || | || ||| || Sbjct 7980693 GGAATGCTCTCCTTGTCCTGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCA 7980752 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || || || ||||||| |||||||| || || |||||| Sbjct 7980753 ACCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 7980803 >seq1 Length=39866532 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||| | || || || || | || || || ||||| || ||||||||| Sbjct 11683493 CCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 11683552 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| || ||||| || ||| Sbjct 11683553 AGGGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCGGGCGGG 11683612 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | || || || || Sbjct 11683613 ATCCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACC 11683672 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 11683673 TCCAGCGTGATCGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCAT 11683719 Score = 118 bits (130), Expect = 3e-21 Identities = 173/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 288233 TGAT-TCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 |||| || | |||| || | |||||| | || ||||| || | ||| || || ||| Sbjct 23566942 TGATGTCGTTCATG-CCGCGGCGGAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGG 23566884 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || |||||||| |||||||| ||||| || | || || || |||||||| || ||| Sbjct 23566883 ATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCGC 23566824 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || || |||| || || | || ||||| |||| || ||||| || | || Sbjct 23566823 TGCTGGTGCGGCGGGACGCCCTCCCTGTCGTGGATCCTCGCCTTGACGTTCTCGACCGAG 23566764 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 |||| || || |||||||||| ||| ||||| |||| ||||| |||||||||||| Sbjct 23566763 TCGCAGCTGTCGACCACGAGCGTGATGGTCCTCCCGTTCAGGGTCTTCACGAATATCTGC 23566704 Query 288472 AT 288473 || Sbjct 23566703 AT 23566702 >seq4 Length=30521686 Score = 127 bits (140), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| || || ||||| ||||||||||| Sbjct 27325100 CCACCACGGAGGCGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCA 27325041 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| || || || | || || || |||||||| || ||||| || ||||| Sbjct 27325040 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGG---TCTGGA 27324984 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| || || ||||||||||| || || |||||||| || || | || ||||| Sbjct 27324983 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGATTCA 27324924 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||| ||||| |||||||| Sbjct 27324923 ACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 27324874 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| || || ||||| ||||| || | || || || |||||| Sbjct 27324608 TCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCGTCCTCAAGCTGCTTGCCAGCGAAG 27324549 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| || ||| || || || || |||||||| || || ||||| || Sbjct 27324548 ATGAGCCGCTGCTGGTCTGGTGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACATTG 27324489 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || | ||||||||||| || || || ||||| || Sbjct 27324488 TCGATCGTGTCAGAGGACTCAACCTCCAAGGTGATCGTCTTGCCAGTAAGGGTCTTCACA 27324429 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 27324428 AAGATCTGCAT 27324418 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| ||||| || ||||| || || || || || | || || || |||||| Sbjct 27324152 TCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCAGCGAAG 27324093 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || || || || ||||| || || || ||||| || || || ||||| || Sbjct 27324092 ATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTG 27324033 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| || || || || | ||||| ||||| || || || ||||| ||| Sbjct 27324032 TCAATCGTATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 27323973 Query 288463 AATATCTGCAT 288473 ||||||||||| Sbjct 27323972 AATATCTGCAT 27323962 >seq2 Length=33962743 Score = 125 bits (138), Expect = 2e-23 Identities = 171/236 (72%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || || || | ||| || || ||||| || |||||| Sbjct 3066914 TGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 3066973 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||||| |||||||| || || | || || || ||||||||||||||||| || ||| Sbjct 3066974 GCGAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTG---GTCT 3067030 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTC 288417 ||| || || || || |||||||| || || ||||| || || || | || |||| Sbjct 3067031 GGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCGGAGCTC 3067090 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| |||||||| |||| ||||| ||||| |||||||| Sbjct 3067091 ---TCAACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 3067143 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288295 TTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGT 288354 || ||||| || || || | || || || | || || || |||||||| |||||||| Sbjct 3067959 TTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGC 3068018 Query 288355 TGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || |||||| || || ||||| |||||||| || || || ||||| || || | Sbjct 3068019 TGG---TCTGGGGGGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTG 3068075 Query 288412 TCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGC 288471 || || || || || || ||||| ||||| ||||||||||||||||| || |||||| Sbjct 3068076 TCAGAAGACTCCACCTCAAGGGTGATAGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGC 3068135 Query 288472 AT 288473 || Sbjct 3068136 AT 3068137 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||| || || ||||| || ||||| || Sbjct 3067373 CCACCACGAAGGCGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 3067432 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || || || | || || || || ||||| || ||||| || || ||| Sbjct 3067433 AGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGG---TCCGGG 3067489 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || || || || || | ||| || || Sbjct 3067490 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAAGACTCC 3067549 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 3067550 ACCTCGAGGGTGATGGTCTTGCCGGTCAGAGTCTTCACGAAGATTTGCAT 3067599 >seq7 Length=26200591 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | ||| || || || || || ||||| || Sbjct 10980357 CCACCACGGAGACGGAGGACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCA 10980416 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||| ||| || || | || || || |||||||| || ||||| || ||| Sbjct 10980417 AGGGTGCATCCTTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGTGGA 10980476 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| ||||| ||||| || || || | ||| || || || Sbjct 10980477 ATGCCCTCCTTATCTTGGATCTTCGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACC 10980536 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| | ||| |||||||||||||| || || |||||||| Sbjct 10980537 TCAAGGGTGATGGACTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 10980583 >seq9 Length=20482102 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||||| || || Sbjct 14668035 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 14667976 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||||||||||||||| || ||||| ||||| |||||||| Sbjct 14667975 TCCAGCGTGATCGTCTTCCCGGTGAGCGTCTTCACGAAGATCTGCAT 14667929 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || |||||||| || || || ||||| || || | ||||| || || || Sbjct 16210139 CCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCC 16210080 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||||||||| || ||||| ||||| |||||||| Sbjct 16210079 AGCGTGATCGTCTTCCCGGTGAGCGTCTTCACGAAGATCTGCAT 16210036 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || || ||||| || || | ||||| || || Sbjct 16215036 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 16214977 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 16214976 TCCAGCGTGATCGTCTTCCCCGTCAGCGTCTTCACGAAGATCTGCAT 16214930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179596693518604