Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 3e-15 seq6 93.3 4e-14 seq2 87.8 2e-12 >seq5 Length=26652778 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCT 45172 || |||||||| | | ||| || |||| || || ||||| ||||| || ||||| ||| Sbjct 7980576 CCACCGCGGAGACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCT 7980635 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| || | || || || || | |||| || ||||| ||||| || Sbjct 7980636 AA-GGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGG 7980694 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || ||||| ||| ||| | || | || | ||||| || ||||| | Sbjct 7980695 AATGCTCTCCTTGTCCTGAATCTTTGCTTTTA-CGTTGTCAATTGTGTCTGACGACTCAA 7980753 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || |||| ||||||||||| | || || ||||| |||||||| Sbjct 7980754 CCTCCAGGGTAATGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCAT 7980802 >seq6 Length=27870862 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || || || ||||| ||||| || || ||| Sbjct 25465250 ATGCCTCCCCTGAGCCTGAGCACAAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 25465191 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 25465190 GCCAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 25465131 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||| || |||||| Sbjct 25465130 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCAGACGACTCG 25465071 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || |||||||| || || || ||||| || |||||| Sbjct 25465070 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 25465020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||||| | ||| || || || || |||||||| ||||| || || ||| Sbjct 25465706 ATACCTCCCCTGAGCCTAAGCACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 25465647 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || || || ||| | || | || ||||||||||| Sbjct 25465646 GCAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 25465587 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || | || | || | ||||| || ||||| Sbjct 25465586 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGAGGACTC 25465528 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || |||||||| || || || || || || ||||| Sbjct 25465527 GACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 25465477 >seq2 Length=33962743 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || || || || || || ||||| ||||| || || || Sbjct 3068136 ATGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCA 3068195 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||| || || || ||| | || | || ||||||||||| Sbjct 3068196 GCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGG 3068255 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || |||||||| || || |||| || | |||||| || ||||| Sbjct 3068256 GGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCC 3068315 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| | || || ||||| || |||||| Sbjct 3068316 ACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATC 3068366 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || || || | ||| | ||| || Sbjct 3067390 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTC 3067449 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || || | || | || ||||||||||| |||||||| || || || || Sbjct 3067450 CAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 3067509 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | ||| || |||||||| || ||||| || | || || Sbjct 3067510 GATCTTGGCCTTGACATTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTT 3067569 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| || || || |||||||| Sbjct 3067570 GCCGGTCAGAGTCTTCACGAAGATTTGCAT 3067599 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || |||||||| ||||| ||||| || || || Sbjct 3067598 ATGCCTCCCCTGAGACGGAGGACAAGGTGAAGCGTTGACTCCTTCTGGATGTTGTAGTCA 3067657 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || || || || | || | || ||||||||||| Sbjct 3067658 GCAAGGGTCCTGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCCGGG 3067717 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | |||||| ||||| || Sbjct 3067718 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAAGATTC 3067776 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || |||||||| || || || ||||| || ||||| Sbjct 3067777 CACCTCGAGGGTGATGGTCTTGCCGGTCAGTGTCTTGACAAAGATCTGCAT 3067827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451981628147280