Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq6 172 7e-38 >seq6 Length=27870862 Score = 172 bits (190), Expect = 7e-38 Identities = 321/458 (70%), Gaps = 20/458 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||| |||||| Sbjct 1267696 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCAT 1267637 Query 127291 AAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGG 127345 | || || ||||| | ||| | || || ||| ||||| | | |||| Sbjct 1267636 CCAGTCGAACGGGTTGGCGACGTTG---TACATCTTCTTG-CACCCGAG-CGCCATGAGC 1267582 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAG- 127404 || || || | |||| |||| ||||||| ||| ||| |||||| |||| ||| Sbjct 1267581 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1267522 Query 127405 GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGAT 127464 | || ||||||||||| ||| |||| || |||| |||||||| || || ||||| Sbjct 1267521 GCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGAT 1267463 Query 127465 GGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAG 127520 | || | ||| | | || | | ||| | | ||| | || ||| || | Sbjct 1267462 CTCCTGGACGCGTGACTCGTCGAGCT-TGCCGCGGAGGAGGTCGTAGAGGAGG--CAG-G 1267407 Query 127521 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTG 127580 | || || ||||||||||||||| ||||||||||| || || |||||| || || | Sbjct 1267406 CGAAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCG 1267347 Query 127581 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCC 127640 ||||||| || |||||||| | |||||| || || || ||||| || ||||||||||||| Sbjct 1267346 GCATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCC 1267287 Query 127641 CCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 |||| || || ||||| || | || |||||||| ||| Sbjct 1267286 CCTCGACGCAGGCGAAGGCGACGAGCCGCTCGGCGAAG 1267249 Score = 154 bits (170), Expect = 2e-32 Identities = 317/459 (69%), Gaps = 22/459 (5%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATT--CTCC 127288 |||||| ||||| ||||||||||||||||| ||||| || | ||| ||||| |||| Sbjct 7610332 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGG--GATATGAGCTCC 7610389 Query 127289 ATAAAATCAAATGGGTT-----CTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGA 127343 || | || || ||||| | ||| | || || ||| || || | | ||| Sbjct 7610390 ATCCAGTCGAAGGGGTTGGCGACGTTG---TACATCTTCTTG-CAGCCGAG-CGCCATGA 7610444 Query 127344 GGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGA 127403 |||| || || | |||| |||| ||||||| ||| || |||||| |||| || Sbjct 7610445 GGAGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGA 7610504 Query 127404 G-GTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACG 127462 | | || ||||||||||| ||| |||| || |||| ||||| || || || ||| Sbjct 7610505 GCGCGACG-GGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACG 7610563 Query 127463 ATGGCGTGAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACA 127519 || || | | || | | | | ||| | | ||| | || ||| || Sbjct 7610564 ATCTCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCGTAGAGGAGG--CAG- 7610620 Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 || || || ||| || |||||||| ||||||||||| || || |||||| || || Sbjct 7610621 GCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCC 7610680 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| ||||||||||| | |||||| || || || || ||||| |||||||||||| Sbjct 7610681 GGCATGAGCCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATC 7610740 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| || || ||||| || | || |||||||| ||| Sbjct 7610741 CCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 7610779 Score = 127 bits (140), Expect = 3e-24 Identities = 282/418 (67%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||||| || ||||| || | || ||||| || || || |||| || | |||| Sbjct 27504284 ACGGTGACCTGCCGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGC 27504343 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTC 12809 | ||| ||||| |||| |||| || || | | | | || ||||||||||||||| Sbjct 27504344 CTGTTTGTCGCGGCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTC 27504403 Query 12810 AAGAGTTGATTGATGGTTTGTTCACGTTCATCA-TTCGCGGGCATACCACCCGCACTGCG 12868 ||||| || || ||||| || || | |||||| ||| | | | | || |||| || Sbjct 27504404 AAGAGCTGGTTAATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACG 27504462 Query 12869 TTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGC 12928 ||| | |||||||| |||||||| |||||||| ||||| || || || | ||| Sbjct 27504463 CTGCCTCCCGACGGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGC 27504522 Query 12929 AACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 || || | || | || || |||||||||||| || |||| ||| || || | Sbjct 27504523 CTTCTCGAACAGGTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTC 27504582 Query 12989 GGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 || |||| || || ||| || || || || || |||| ||| || || || || Sbjct 27504583 GGACGCGGCGCAGGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAG 27504642 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCACC 13105 |||||||| || || || || |||| | |||| | | | |||||| |||| || Sbjct 27504643 TGTCTTCCCGGTTCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 27504699 Score = 100 bits (110), Expect = 3e-16 Identities = 229/342 (67%), Gaps = 6/342 (2%) Strand=Plus/Plus Query 10504 CCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTGAAG 10563 |||||| | || || ||| ||| | || | | ||||| || || || ||| | Sbjct 1820535 CCCTTCCACCCGCGCTCCCCCTACGCCGCCGCCAAGGTCGCCGCCCACTGGTACACCGTC 1820594 Query 10564 AATTATCGCGAATCCTATGGTCTCTTTGTGTGCTCCGGTATTCTCTTCAACCACGAGTCA 10623 || || ||||| |||| || ||||| | ||| ||| | |||||||||||||| || Sbjct 1820595 AACTACCGCGAGGCCTACGGCCTCTTCGCCTGCAACGGCGTGCTCTTCAACCACGAATCC 1820654 Query 10624 CCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACCGATGGTATCAAACAAATCGTG 10683 || || || ||| | | ||||| || ||||||||| | || | |||| | Sbjct 1820655 CCACGCCGCGGCGAGAACTTCGTCACCCGCAAGATCACCCGCGCCGTCGGCCGAATCAAG 1820714 Query 10684 G-CGGGTG--AGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGGA 10740 | |||| ||| || || | | || |||||| ||||| |||||||||||| Sbjct 1820715 GTCGGGCTCCAGACCAAGGTCTTCC---TCGGCAACCTCTCCGCCGCCAGGGACTGGGGA 1820771 Query 10741 CACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTCCAACAAGAAGAGGCGGACGAA 10800 |||| |||||| || || || ||||||| | | || || || || || | | ||| Sbjct 1820772 TTCGCCGGGGACTACGTCGAGGCAATGTGGCGCATGCTGCAGCAGGACAAGCCCGGCGAC 1820831 Query 10801 TATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTC 10842 || |||||||| || | |||| | ||| ||||| ||||||| Sbjct 1820832 TACGTCGTCGCCACCGAGGAGTCCCACACCGTCGAGGAGTTC 1820873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613477920368880