Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq6 215 8e-51 >seq6 Length=27870862 Score = 215 bits (238), Expect = 8e-51 Identities = 496/739 (67%), Gaps = 20/739 (3%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || |||||| ||||| | |||| ||||| Sbjct 7610347 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGATATGAGCTCCATCCAGTCGAAGGGGTT 7610406 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| || | | ||| || || || || Sbjct 7610407 GGCGACGTTGTACATCTTCTTGCAGCCGAGCGCCATGAGGAGGCGGTCGGCGACGAACTC 7610466 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| | || | ||| || || | ||| ||||||||||| || | Sbjct 7610467 GATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGCGCGACGGGGAGCGCGTCGCA 7610526 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT-GCGAGACACGTTCGTACC 159887 | |||||| |||| || ||||| || |||| || |||| ||| ||| || | | Sbjct 7610527 GACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATCTCGCG-GACGCGCGCCTCGT 7610585 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | ||||||| | | |||| | | |||||||| || |||||||||||||| |||| Sbjct 7610586 CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCT 7610642 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||||| ||||||||| | | ||||||||||||||| ||| ||| |||| Sbjct 7610643 CGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCCCGCTTCTTGA 7610702 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| | | | | || ||||||||||| ||| || || || Sbjct 7610703 GCCAGAAGATGG-CGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGGCG 7610761 Query 160067 ACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 ||||| | ||| | || ||| | | | | | | |||| | ||||||| || || Sbjct 7610762 ACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCAGCGCATGGCCCAGTCGGC 7610817 Query 160126 CTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCT 160181 | ||||| ||||||| | | |||| |||| |||| | ||||| ||| Sbjct 7610818 C----TTGCGGCGCACGGCCGGGACGGTGTCGATGGCGCGGAACAGCCGGTCCTTCTCGG 7610873 Query 160182 TCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGA 160241 | || ||| || | | |||| ||||||||| || | ||| | || |||| Sbjct 7610874 CGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTACATCTCGGAGTGGATGTTCTCGA 7610933 Query 160242 TGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACC 160301 |||| ||||| || |||||| |||||| |||||| || |||||| Sbjct 7610934 TGGCGATCTGGAATCCGTAGAAGGCGCGCGCCTCGGCGACCTGCACGTCGGACATGAACC 7610993 Query 160302 TTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAG 160361 | | || || | || | ||||||| ||| || ||||| || | |||||| | Sbjct 7610994 TGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGCACGTGGG 7611053 Query 160362 AGATGAAATGTCTCTCGTC 160380 ||||||| || | |||||| Sbjct 7611054 AGATGAAGTGGCGCTCGTC 7611072 Score = 205 bits (226), Expect = 1e-47 Identities = 494/741 (67%), Gaps = 24/741 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| |||||||||||||||| || ||| || ||||| | |||| ||||| Sbjct 1267681 CTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATCCAGTCGAACGGGTT 1267622 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 |||| || |||| | ||||| ||| |||| || ||| || || || || Sbjct 1267621 GGCGACGTTGTACATCTTCTTGCACCCGAGCGCCATGAGCAGCCGGTCGGCGACGAACTC 1267562 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 |||||| | ||| |||| | ||| ||||| | ||| ||||||||||| || | Sbjct 1267561 GATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGCGCGACGGGGAGCGCGTCGCA 1267502 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGT---TCGTA 159885 | |||||| |||| || || || || |||| || |||| | ||| ||| |||| Sbjct 1267501 GACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATCTCCTGGACGCGTGACTCGT- 1267443 Query 159886 CCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 | ||||||| | | |||| | | |||||||| || ||||||||||| || || Sbjct 1267442 --CGAGCTTGCCGCGGAGGAGGTCGT---AGAGGAGGCAGGCGAAGTCGCAGTGGAGACC 1267388 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 |||||| || ||||||| ||||||||| | | ||||||||||||||| || ||| || Sbjct 1267387 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCGCGCTTCTT 1267328 Query 160006 GAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACG 160064 |||||| || ||||| ||| || | | | | || ||||||||||| ||| || || | Sbjct 1267327 GAGCCAGAAGATGGC-GCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCAGGCGAAGG 1267269 Query 160065 CCACGAGCCTCTCACCAAAAGAGGCG-TTGGTGTCATGGGTCCACCTTTTGGCCCATTCA 160123 | ||||||| ||| | || ||| | | | | | | |||| | ||||||| || Sbjct 1267268 CGACGAGCCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCATCGCATGGCCCAGTCG 1267213 Query 160124 GCCTTCTTTGCGATGCACGGC----ATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTC 160179 ||| ||||| ||||||| | | |||| |||| || | | ||||| ||| Sbjct 1267212 GCC----TTGCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGAAGAGGCGGTCCTTCTC 1267157 Query 160180 CTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTC 160239 | || ||| || | | ||| ||||||||| || | ||| | || || Sbjct 1267156 GACGTCGTCGCGGATGTACGTCTCGAGCAGAAGCGAGTACATCTCCGAGTGGATGTTCTC 1267097 Query 160240 GATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAA 160299 |||||| ||||| ||| |||||| ||||| |||||| || |||| Sbjct 1267096 GATGGCGATCTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGCACGTCGGACATGAA 1267037 Query 160300 CCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTG 160359 ||| | || || | || | || |||| |||||| ||||| || | |||||| Sbjct 1267036 CCTGGAGGCGAGGTTCTCGAGCACGATGCCATCGGAGGCCGCGAAGAAGGCGAGCACGTG 1266977 Query 160360 AGAGATGAAATGTCTCTCGTC 160380 |||| ||| || | |||||| Sbjct 1266976 GGAGACGAAGTGGCGCTCGTC 1266956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795117251218080