Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3 131 7e-25 seq4 93.3 2e-13 seq5 91.5 6e-13 >seq3 Length=34446443 Score = 131 bits (144), Expect = 7e-25 Identities = 248/365 (68%), Gaps = 9/365 (2%) Strand=Plus/Plus Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGT 451306 |||||||||||||| |||||||||| || ||| || | || ||| || | || Sbjct 32659896 GAAGAAATTTCATCCATGGTTCTTATCAAGATGCGTGAGATCGCTGAAGCTTACCTAGGA 32659955 Query 451307 TCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAA 451366 || | || | |||| || | |||||||| ||||| ||||||||| | || |||| Sbjct 32659956 TCAACTGTGAAGAATGCTGTTGTCACTGTTCCTGCTTACTTCAATGATTCCCAGAGGCAG 32660015 Query 451367 GCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCT 451426 |||||||||||||| || |||||| ||| | |||||| | || || || ||||| || Sbjct 32660016 GCAACTAAAGATGCCGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCA 32660075 Query 451427 ACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAAC------AGAAGaaaaa 451480 ||||| ||||| | || ||||| || | || || | || | || || Sbjct 32660076 ACAGCTGCTGCAATTGCTTATGGTCTTGACAA---GAAGGCGACTAGTGTTGGTGAGAAG 32660132 Query 451481 aaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAA 451540 || | | | ||||| ||||||| || ||| |||| || | ||| ||||||| Sbjct 32660133 AACGTGCTCATTTTTGACCTTGGTGGTGGTACTTTTGATGTCTCCCTCCTTACAATTGAG 32660192 Query 451541 GATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATT 451600 || || | ||||| || || ||||| |||||| ||||| || || || || || || Sbjct 32660193 GAGGGTATTTTTGAGGTGAAAGCAACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTT 32660252 Query 451601 GATAA 451605 || || Sbjct 32660253 GACAA 32660257 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 451265 GTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCA 451324 ||| | || || ||||| || ||||| ||| || |||| | ||| | | || Sbjct 515848 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 515789 Query 451325 GTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGA 451384 || ||||||||||| ||||||||||||||||| || || || || || || ||||| || Sbjct 515788 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 515729 Query 451385 CATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCA 451444 | || ||||| | |||| | |||| || |||||||| || || |||||||| | Sbjct 515728 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 515669 Query 451445 TATGGA 451450 |||||| Sbjct 515668 TATGGA 515663 >seq4 Length=30521686 Score = 93.3 bits (102), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || ||||| || || || || | || ||||| || || Sbjct 27323962 ATGCAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCC 27324021 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | || || ||||| || ||||| || || ||||| || || Sbjct 27324022 GATACGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAG 27324081 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| | || ||| | || || || ||||| ||||| | ||| | ||||||||||| Sbjct 27324082 CAACGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAAC 27324141 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 27324142 ATCCAGAAGGA 27324152 >seq5 Length=26652778 Score = 91.5 bits (100), Expect = 6e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 451322 GCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCA 451381 ||||| || || || || || ||||||||||| ||||| || |||||| |||||||| Sbjct 11577298 GCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAACAAAAGATGCT 11577357 Query 451382 GGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTA 451441 || | |||||||| || | ||||| || || || || || ||||| ||||| || | Sbjct 11577358 GGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTGCAGCATCTTTG 11577417 Query 451442 GCATATGG 451449 |||||||| Sbjct 11577418 GCATATGG 11577425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975621751560344