Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 102 1e-16 >seq6 Length=27870862 Score = 102 bits (112), Expect = 1e-16 Identities = 277/412 (67%), Gaps = 13/412 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || || ||||| || || | || || || || ||||| || ||| Sbjct 6187484 CGGTCGAAGCGCCCCGGCCGGAGCAGCGCCGCGTCGAGGATCTCCGGCCGGTTGGTGGCG 6187543 Query 11563 GCAATGACTACAATGCCA--GTCTCATT-GTCGAAACCGTCCATTTCTGTGAGAAGCTGG 11619 || || || || | ||| ||| | | |||| |||||||| || ||||| |||||| Sbjct 6187544 GCGATCACGACGACGCCGCCGTCGCCGCCGCCGAACCCGTCCATCTCGGTGAGCAGCTGG 6187603 Query 11620 TTGATCGTCTGTTCACGCTCATCGTTGGAGG-GCATACCACCT-GCCGAACGCTTCTTAC 11677 || | |||||| || | ||| ||||| | || | | || |||| |||| | | Sbjct 6187604 TTCAGCGTCTGCTCCCTCTCGTCGTTCCCGCCGCCGATCCCCGCGCCG--CGCTGCCGCC 6187661 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG--CCTGTTC 11735 | || ||||| ||||| |||||||| |||| ||||| | | || | || ||||| | Sbjct 6187662 CCACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGCTCGC-CTTGGCCCTGT-C 6187719 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || || || || ||| ||| || || || ||||||||||| | ||| | | || Sbjct 6187720 GAACAGGTCGCGCACCCGCGACGCGCCGACGCCGACGAACATCTCGATGAA-CTCGGAGC 6187778 Query 11796 AGAACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 | ||| || | |||||| || | ||| || ||||| || || || || |||| Sbjct 6187779 CGGACAGCGAGAAGAAGGGCACGCCGGCCTCGCCGGCGATCGCCTTGGCCAGCAGCGTCT 6187838 Query 11855 TACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | ||||| || || | || | || || |||| |||| || | ||||| Sbjct 6187839 TCCCCGTCCCCGGCGGGCCGACCAGCAGCACGCCCTTGGGGGTCCTCGCACC 6187890 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || ||||||||||| Sbjct 1267395 TGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCCG 1267336 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 1267335 CGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCAG 1267276 Query 119628 GCGAAAGCGAATAGACGCTCAGC-AAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| | ||||| ||| | ||||| Sbjct 1267275 GCGAAGGCGACGAGCCGCTCGGCGAAGCGCTCGCCGC-CGTCGATCCATCGCATGGCCCA 1267217 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGC 119725 || |||||| || | | |||||| || | |||||| Sbjct 1267216 GTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGC 1267178 Score = 93.3 bits (102), Expect = 5e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || |||| || || |||||||| || Sbjct 7610633 TGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCCC 7610692 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || || || || |||||||| ||||| || ||| Sbjct 7610693 CGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCAG 7610752 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAA 119653 ||||| |||| || ||||| || || Sbjct 7610753 GCGAAGGCGACGAGGCGCTCGGCGAA 7610778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588947891120400