Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 127 2e-24 >seq6 Length=27870862 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 1267396 GTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGTCC 1267337 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || ||||||||||| || ||||||||||| ||||| || || Sbjct 1267336 GCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCCTCGACGCA 1267277 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | || |||||||||||| Sbjct 1267276 GGCGAAGGCGACGAGCCGCTCGGCGAAG 1267249 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 7610632 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGCCC 7610691 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 7610692 CCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATCCCCTCGACGCA 7610751 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || || || | ||||||||||||||| Sbjct 7610752 GGCGAAGGCGACGAGGCGCTCGGCGAAG 7610779 Score = 118 bits (130), Expect = 1e-21 Identities = 273/406 (67%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || | || || ||||| ||||| | || || | |||| | || |||||| Sbjct 27504296 CGATCGAACCTCCCAGGGCGAAGAAGCGCCGCGTCGAGCACATCAGGCCTGTTTGTCGCG 27504355 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||| |||| | ||| | | |||| ||||||||||| ||||| || |||||| Sbjct 27504356 GCGAGCACAATGACACCGCTATTGCCGGCAAATCCATCCATCTCAGTCAAGAGCTGGTTA 27504415 Query 9312 ATAGTTTGTTCCCGTTCATCATT-CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9370 || || || |||| |||||||| | | | | | ||||||| || ||| | || || Sbjct 27504416 ATGGTCTGCTCCCTCTCATCATTTCCCCCTCCGAGC-CCAGCACCACGCTGCCTCCCGAC 27504474 Query 9371 GGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 9430 ||||||||| |||||||||||||| || || || || | ||| | || || || Sbjct 27504475 GGCATCAATTTCATCAATGAAGACGATGCAAGGGGCCTTGGCCTTGGCCTTCTCGAACAG 27504534 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 || | ||||| ||| || ||||| || |||| ||| || || | | |||| || Sbjct 27504535 GTCCCTGACCCTGGAGGCACCGACACCGACGAACAGCTCAACGAACTCGGACGCGGCGCA 27504594 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 || ||| || || | || || || | ||| || || || || ||||| || || Sbjct 27504595 GGAGAAGAATGGCACTCCGGCCTCCCCGGCGACGGCACGCGCCAGCAGTGTCTTCCCGGT 27504654 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGT-GGAATCTTGGCGCC 9595 || ||| || |||| | |||| ||| | || |||||||| || Sbjct 27504655 TCCGGGCGGGCCGACGAGCA-GGCATCCCTTGGGGATCTTGGCCCC 27504699 Score = 104 bits (114), Expect = 3e-17 Identities = 229/340 (67%), Gaps = 14/340 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| ||||||||| | | || || || || || |||| || || || | ||||| Sbjct 24747143 ATCCAGGATATCAGCCCTGTTGGTGGCAGCAATAACAATGATTCCAGTGTTCCCCTCAAA 24747202 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||||||| |||| | || || | ||| || |||| ||||||||| | Sbjct 24747203 ACCATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCC------ 24747256 Query 9344 ACCACCAGCAC-TG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAAT 9397 ||||||| || || | |||| | || || |||||||| ||||||| || || || Sbjct 24747257 ACCACCAATACCTGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTAT 24747316 Query 9398 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || ||| || || | | |||||||| ||||||| ||| || || || Sbjct 24747317 GCAAGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCC 24747376 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 9516 ||||||||||||||||| | | | | | || | || || || ||| || ||| | Sbjct 24747377 GACAAACATCTCCACAAACTCAGATCCTG-ATATCGAGAAAAACGGCACACCAGCTTCCC 24747435 Query 9517 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | ||||| || ||| || | ||||||||| || || || Sbjct 24747436 CTGCAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGG 24747475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589952643166320