Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq8 425 6e-114 seq2 352 3e-92 seq10 298 6e-76 seq12 136 5e-27 seq4 95.1 1e-14 >seq8 Length=25958679 Score = 425 bits (470), Expect = 6e-114 Identities = 595/830 (72%), Gaps = 6/830 (1%) Strand=Plus/Plus Query 169558 GGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCT 169617 |||| ||| | || || ||||| || ||||||||||| || |||| | || || Sbjct 20127949 GGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCG 20128008 Query 169618 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAAT 169677 |||||| | ||||| |||||||| |||||||| ||| |||||||||| ||||| || ||| Sbjct 20128009 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 20128068 Query 169678 GGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTG--GTATCTCAGCATACATGG 169735 || ||||||||| || | | | | |||||| | ||| ||| || ||| |||| Sbjct 20128069 GGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCAT--ATGG 20128126 Query 169736 GAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACT 169795 | | |||||||||| | | | | || |||||||||||||| ||||||||| | Sbjct 20128127 GTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 20128186 Query 169796 CTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCAT 169855 | || || || | ||||| ||||| ||||| ||||| ||||||| || | Sbjct 20128187 CAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAGGAAGTT 20128246 Query 169856 TCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAG 169915 |||||||||||||||| |||| || || |||||||||||||||||| | || ||||| | Sbjct 20128247 TCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGG 20128306 Query 169916 CAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAG 169975 ||||||||||||| || |||||||| || |||||| ||| ||||| || | ||||| | Sbjct 20128307 CAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCG 20128366 Query 169976 GATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAA 170035 | || ||||| || ||||||||||| | || || || | | ||||| ||||| | Sbjct 20128367 GTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCA 20128426 Query 170036 CAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACA 170095 | || | || || || | ||||| | || || ||||| ||||| || || || | Sbjct 20128427 CTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATA 20128486 Query 170096 TAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACT 170155 | || || || || ||||| ||||| || | |||||||| |||||| || ||||||| Sbjct 20128487 TTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACT 20128546 Query 170156 CAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTA 170215 | | ||||||||||| | | || || ||||| ||| | | ||||| || || Sbjct 20128547 CTCGTTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTT 20128606 Query 170216 TGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTG 170275 | ||||| | || ||||| ||||| | || || ||||| || |||||||| || |||| Sbjct 20128607 TAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTG 20128666 Query 170276 AT-GCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGT 170334 || || || || | | || |||| |||| | | ||| | || || | ||| Sbjct 20128667 ATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGT 20128725 Query 170335 ATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||| ||||| ||| | ||||| ||||||||||| ||||||||||| Sbjct 20128726 ATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 20128775 >seq2 Length=33962743 Score = 352 bits (390), Expect = 3e-92 Identities = 707/1045 (68%), Gaps = 35/1045 (3%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | |||||||||||| || || |||||||| || ||||||||||||| Sbjct 13366837 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 13366778 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || ||| | |||||||| || | | | || |||||||| |||||| || || Sbjct 13366777 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 13366718 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || || |||||||| ||||| | || || ||| | || || || || ||| || Sbjct 13366717 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 13366658 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 170763 || | |||||||||| | |||| |||| | | || | |||| || | || | Sbjct 13366657 ACCGTAGCAGTTTCCCCCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 13366603 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| || ||||||||||| ||| |||||||| ||| | || ||| |||||| | Sbjct 13366602 GGGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTT 13366543 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || | ||||| | |||| ||| |||||||||||| | | |||||||| | | Sbjct 13366542 TTGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 13366483 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 | || ||| | | ||||| || ||| | ||||||||| || || || | Sbjct 13366482 CTCGATCTGTTCAATTGTGGCCTTATAATGCAATTTCATTCTCTGGCCCAATTGCTGTTT 13366423 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | | || | ||| |||||||| || || | |||||||||| || || | Sbjct 13366422 TTGTTTCCGTATTCCCGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTT 13366363 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 13366362 TTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 13366303 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 |||| |||||||| |||||||| ||||| ||| || |||| | || | |||| || | Sbjct 13366302 TGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 13366243 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 ||||||| ||||| ||| | ||||| | | ||| ||| | | | || || Sbjct 13366242 TTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGAC------GGTGA---TGGTA--- 13366195 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 |||| || || || | ||| | || || || | ||||| ||||| | Sbjct 13366194 -----CAAA----TACCTTTCGCACTTTTAACCCAACTCAAGCTGAAGACACTTATTCAA 13366144 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || | || || || | || ||||| || || |||||| ||||||| || || ||| | | Sbjct 13366143 TGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 13366084 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 ||||| ||| ||||| | || || || |||| ||| | |||| |||| || Sbjct 13366083 GGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCG 13366024 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || || || || || ||||| || || || || || || || || || | |||| Sbjct 13366023 TAGTCGGCCTGGCTCTGAACCTACTTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 13365964 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 | ||||| || || || |||||||||||||| || ||||| ||| | || | ||||| Sbjct 13365963 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACAAGGGTATTC 13365904 Query 171484 GAGCATGGATGTCA--TCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGT 171541 | || |||||| || |||| || || || ||||| || | ||||||| || || || Sbjct 13365903 GTGCGTGGATGGCAGCTCAG--GATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGT 13365846 Query 171542 GTTACCAAGAGGTAACGCACTTTAA 171566 |||| | || ||||| |||||| Sbjct 13365845 TCAACCACGTGGAAACGCTCTTTAA 13365821 Score = 96.9 bits (106), Expect = 4e-15 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 171393 TACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTAC 171452 || || || || || || || || | ||||| ||||| || || || |||||||||||| Sbjct 13367198 TATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTAC 13367257 Query 171453 ACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCA--TCAGTTGACCAAC 171510 || || ||||| ||| | || || ||||| | || |||||| || |||| || || | Sbjct 13367258 ACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAG--GATCAGC 13367315 Query 171511 CACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 | ||||| || | ||||||| || || || ||||| | || ||||| |||||| Sbjct 13367316 CTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 13367371 >seq10 Length=20731201 Score = 298 bits (330), Expect = 6e-76 Identities = 426/600 (71%), Gaps = 10/600 (2%) Strand=Plus/Plus Query 169785 TGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGG 169844 ||||||||| || || || || | ||||| ||||| ||||| | ||||| |||| Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 169845 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTT 169904 ||| || |||| |||||||||||| |||| || || |||||||||||||||||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 169905 CGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 169964 || ||||| ||||| |||||||| || ||||||| || |||||| ||| ||||| || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 169965 AATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAAT 170024 | ||||| || || |||| || ||||||||||| | || || || | | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 170025 CAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGA 170084 | | ||||| || || | || || || | ||||| | || || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 170085 AACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTC 170144 || || || || || || || || ||||| ||||| || | |||||||| |||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 170145 ATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATG 170204 || |||||||| || | ||||||||||| | || | || ||||| ||| | | || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 170205 GTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCA 170264 ||| | || | ||||| | || ||||| ||||| | || || ||||| || ||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 170265 ATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGC 170324 || || ||||| || | | ||| || |||| |||| | | ||| | || Sbjct 18976131 ATATGTAGTTGA---TAGCCAATTAAT-------ACTTGGGCTGATATCATCAACCGTGC 18976180 Query 170325 AAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 || | ||||||||||| ||||| ||| | ||||| ||||||||||| ||||||||||| Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Score = 156 bits (172), Expect = 5e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 169834 TACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTC 169893 ||||| ||||||| || ||||||||||||||||| |||| || || ||||||||| Sbjct 9553656 TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 9553597 Query 169894 AACTTTATGTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCA 169953 ||||||||| | || ||||| |||||||||||||| || |||||||| || |||||| | Sbjct 9553596 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 9553537 Query 169954 GGAGTAGCAGGAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACT 170013 || ||||| || | ||||| || || ||||| || ||||||||||| | || || Sbjct 9553536 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACC 9553477 Query 170014 TCATCTCTAATCAGAGAAACAACAGA 170039 || | | ||||| ||||| || || Sbjct 9553476 TCTAGTTTGATCAGGGAAACCACTGA 9553451 >seq12 Length=23561512 Score = 136 bits (150), Expect = 5e-27 Identities = 183/252 (73%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || || Sbjct 9700355 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 9700413 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || ||||| || || ||||| | ||||| || || || | || | || | ||| Sbjct 9700414 ATCGCCTTCATCGCTGCCCCTCCAGCAGATATTGATGGTATTCGTGAGCATGTTTCTGGT 9700473 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 | ||| | || || ||||| || ||||||||| | || |||| | || | || ||| Sbjct 9700474 TTTTTACTTTACGGAAACAATATTATCTCTGGTACCATTATTCCTACTTCTACTGCGATC 9700533 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 ||| | ||||| ||| |||| |||||||| ||| |||||||||| ||||| || ||||| Sbjct 9700534 GGATTGCACTTTTACTCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGC 9700593 Query 169681 GGTCCTTATCAG 169692 ||||||||| || Sbjct 9700594 GGTCCTTATGAG 9700605 >seq4 Length=30521686 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 169615 GCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTAT 169674 || |||||| | ||||| |||||||| |||||||| ||| |||||||||| ||||| || Sbjct 7243080 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 7243139 Query 169675 AATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATG 169734 ||||||||||||||| || | | | | |||||| | ||||| | | || ||| Sbjct 7243140 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 7243199 Query 169735 GGAAGACAGTGGGAACT 169751 || | |||||||||| Sbjct 7243200 GGTCGTGAGTGGGAACT 7243216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579185157069120