Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq8 491 5e-134 seq10 365 5e-96 seq12 152 6e-32 seq4 82.4 9e-11 >seq8 Length=25958679 Score = 491 bits (544), Expect = 5e-134 Identities = 600/816 (74%), Gaps = 2/816 (0%) Strand=Plus/Plus Query 168659 TATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACAC 168718 || |||||||| || ||||| ||||| || |||| |||| || ||||| | ||| Sbjct 20127961 TACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCAC 20128020 Query 168719 TTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTAC 168778 || ||||||||||||||||| || | | |||||||||||||| ||||| |||||||| Sbjct 20128021 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTAT 20128080 Query 168779 CAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAA 168838 || | | | | |||||| || | || | || | |||||| | |||||||| Sbjct 20128081 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCATATGGGTCGTGAGTGGGAA 20128140 Query 168839 TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCT 168898 | | | | || |||||| | |||||||| |||||| |||||||| || || | Sbjct 20128141 CTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCG 20128200 Query 168899 GCAGCATTTGCAGTATTCCTTGTAT-ACCCATTTGGTCAGGGTTCTTTCTCTGATGGTAT 168957 || || ||| || ||| ||| || |||| ||||||| || ||||||||||||||| Sbjct 20128201 GCTGCTACTGCTGTTTTC-TTGAATTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTAT 20128259 Query 168958 GCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACAT 169017 |||| ||||||| ||||| || |||||||| ||| | |||||||| |||||||| ||||| Sbjct 20128260 GCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACAT 20128319 Query 169018 TCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTC 169077 ||||||||||| || || ||| ||| ||||| ||| | ||||| || || |||||| Sbjct 20128320 CCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAG 20128379 Query 169078 CGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATC 169137 || ||||||||||| | ||||| ||| | | ||||| || || ||||| | ||||| Sbjct 20128380 TGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATC 20128439 Query 169138 TCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACA 169197 | || | ||||||| || |||||||| ||||| || ||||||||||| || || || Sbjct 20128440 TGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCA 20128499 Query 169198 TGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCA 169257 ||| || || || ||||||||||||| ||||| ||||| |||||||| | | || Sbjct 20128500 TGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCGTTACA 20128559 Query 169258 CTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTAC 169317 ||||||| | | || | || || ||| | | ||||| || || | ||||| |||| Sbjct 20128560 CTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTAC 20128619 Query 169318 AATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAA 169377 ||||| ||||| | |||||||| || || |||||||| || || ||| | ||| Sbjct 20128620 TATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCG 20128679 Query 169378 GATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCA 169437 | ||| ||| |||| ||| | | ||| | || || |||||||||||||||||||| Sbjct 20128680 CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCA 20128739 Query 169438 TGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 || ||||| |||||||||||||| |||||| |||| Sbjct 20128740 CGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 20128775 >seq10 Length=20731201 Score = 365 bits (404), Expect = 5e-96 Identities = 440/600 (73%), Gaps = 10/600 (2%) Strand=Plus/Plus Query 168874 TGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGG 168933 |||||| |||||||| || || | || || ||| || ||| | | ||||| |||| Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 168934 TCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTT 168993 ||| || ||||| ||||||||||||| ||||||| ||||| || |||||||| ||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 168994 CGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGG 169053 |||||||| ||||| || ||||| |||||||||| || || ||| ||| ||||| || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 169054 TATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAAT 169113 | | ||||| || || ||||| || ||||||||||| | ||||| ||| | | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 169114 CAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 169173 | | || || ||||| | |||||| || | ||||||| || |||||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 169174 AACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAG 169233 || ||||||||||| || || ||||| || || || ||||||||||||| ||||| || Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 169234 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATG 169293 ||| |||||||| || | | ||||||||| | || | | || || ||| | | || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 169294 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCA 169353 ||| | || | ||||| |||| ||||| ||||| | |||||||| || || ||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 169354 ATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGC 169413 || || || ||| || ||| ||| |||| ||| | | ||| | || Sbjct 18976131 ATATGTAGTTGAT----------AGCCAATTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 169414 AAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 || |||||||||||||||||||| || ||||| |||||||||||||| |||||| |||| Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Score = 185 bits (204), Expect = 1e-41 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 168923 TACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTC 168982 ||||| ||||||| || ||||||||||||||||||| ||||||| ||||| || ||| Sbjct 9553656 TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTC 9553597 Query 168983 AACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCA 169042 ||||| ||| | |||||||| |||||||| ||||| ||||||||||| || || ||| | Sbjct 9553596 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 9553537 Query 169043 GGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACA 169102 || ||||| ||| | ||||| || || |||||| || ||||||||||| | ||||| Sbjct 9553536 GGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACC 9553477 Query 169103 TCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACA 169154 ||| | | ||||| || || ||||| | |||||| || | ||||||| Sbjct 9553476 TCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACA 9553425 >seq12 Length=23561512 Score = 152 bits (168), Expect = 6e-32 Identities = 208/288 (72%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 9700315 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 9700374 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| | || || || ||||| || Sbjct 9700375 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCC 9700433 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || | ||||| || || || | || | ||| | ||| | || | || |||||||| Sbjct 9700434 TCCAGCAGATATTGATGGTATTCGTGAGCATGTTTCTGGTTTTTTACTTTACGGAAACAA 9700493 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||| | || |||| |||| | || ||||| | ||||| ||| |||| Sbjct 9700494 TATTATCTCTGGTACCATTATTCCTACTTCTACTGCGATCGGATTGCACTTTTACTCAAT 9700553 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 ||||||||| || | | |||||||||||||| ||||| |||||||| Sbjct 9700554 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTA 9700601 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 169292 TGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAAC 169351 ||||| || || | ||||| |||| ||||| ||||| | |||||||| || || ||| Sbjct 9700752 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 9700811 Query 169352 CAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGA 169411 |||| || || ||| | ||| | ||| ||| |||| ||| | | || | Sbjct 9700812 TAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAATCGT 9700871 Query 169412 GCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTA 169471 || || |||||||||| |||||| || || ||||| ||||||||||||| |||||| || Sbjct 9700872 GCTAATCTTGGTATGGGAGTAATACACGAACGTAATACTCACAACTTCCCTCTAGACCTA 9700931 Query 169472 GC 169473 || Sbjct 9700932 GC 9700933 >seq4 Length=30521686 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 168704 GCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATAT 168763 || ||||| | ||||| ||||||||||||||||| || | | |||||||||||||| Sbjct 7243080 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 7243139 Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATG 168823 |||||||||||||| || | | | | |||||| || | || | || || ||| Sbjct 7243140 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 7243199 Query 168824 GGTAGACAGTGGGAA 168838 ||| | |||||||| Sbjct 7243200 GGTCGTGAGTGGGAA 7243214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564414662024640