Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20rufipogon_20[genbank_20GCA_5F000817225.1_202015-01-05] 3,818 sequences; 339,177,042 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq8 416 3e-111 seq2 345 5e-90 seq10 309 4e-79 seq12 100 3e-16 seq6 89.7 6e-13 seq1 89.7 6e-13 >seq8 Length=25958679 Score = 416 bits (460), Expect = 3e-111 Identities = 599/840 (71%), Gaps = 6/840 (1%) Strand=Plus/Plus Query 171970 GTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCA 172029 ||| | |||| ||| | || || ||||| || ||||||||||| || |||| | || Sbjct 20127943 GTTTCTGGTTTTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCT 20128002 Query 172030 AACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGATGAATGGTTG 172089 || || || | ||||| ||||| || |||||||| ||| | || ||||| ||||| Sbjct 20128003 GCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTA 20128062 Query 172090 TACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTAT--CTCAGCAT 172147 |||||||| ||||||||| || | | | | |||||| | | ||| | || ||| Sbjct 20128063 TACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTCAT 20128122 Query 172148 ACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATATGTGTAG 172207 | |||| | |||||||||| | | | | |||||| | || ||||| ||| | Sbjct 20128123 A--TGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTG 20128180 Query 172208 CATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGGTCAGG 172267 |||||||||| ||||| | || || |||||| ||| | || || | ||||| | Sbjct 20128181 CATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGAATTACCCTATTGGTCAAG 20128240 Query 172268 GTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGT 172327 | ||||||||||||||||| |||| || || ||||| |||||||||||| | || | Sbjct 20128241 GAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTAT 20128300 Query 172328 TCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGT 172387 |||| |||||||||||||| || |||||||| || |||||| ||| ||||| || | | Sbjct 20128301 TCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAT 20128360 Query 172388 TTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAG 172447 | || || || ||||| || ||||| ||||| || || || ||| | | ||||| | Sbjct 20128361 TCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGG 20128420 Query 172448 AGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGAAACAT 172507 | || |||||| ||||| || | || |||| || || ||||| ||||| || | Sbjct 20128421 AAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTT 20128480 Query 172508 ACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCA 172567 | || || || || || || ||||| ||||| || | |||||||| |||||| ||| | Sbjct 20128481 ATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTA 20128540 Query 172568 ACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAA 172627 ||||||| | | ||||||||| | | || || ||||| ||| | | ||||| | Sbjct 20128541 ACAACTCTCGTTCGTTACACTTCTTCTTGGTAGCTTGGCCTGTAGTAGGGATTTGGTTCA 20128600 Query 172628 CCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAG 172687 | || | ||||| |||| ||||| ||||| || ||||| ||||| ||||||||||| | Sbjct 20128601 CTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTG 20128660 Query 172688 TTGTAGAT-GCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAAC 172746 | || ||| || || ||| || || ||| |||| ||| | | ||| | || || Sbjct 20128661 TAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 20128719 Query 172747 CTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGCTTCT 172806 || ||||||||||| ||||| ||| | ||||| ||||||||||| ||||||| ||| || Sbjct 20128720 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 20128779 >seq2 Length=33962743 Score = 345 bits (382), Expect = 5e-90 Identities = 703/1043 (67%), Gaps = 31/1043 (3%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | |||||||||||| || || ||||| || || | ||||||||||| Sbjct 13366837 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 13366778 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || ||| | ||||||||||| | || | || |||||||| ||| || || || Sbjct 13366777 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 13366718 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || || |||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 13366717 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 13366658 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGT---CATAGTCTT--CTGTTCCTTT 173185 || | |||||| ||| | |||| |||| | | || | |||| || | || | Sbjct 13366657 ACCGTAGCAGTTTCCCCCCCTG-----CCAATAGTTTAGCACACTCTTTGTTGCTACTAT 13366603 Query 173186 GGGGACCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACT 173245 |||| || ||||||||||| || ||||||| ||| | || || ||||||| | Sbjct 13366602 GGGGCCCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTATGGACTT 13366543 Query 173246 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCG 173305 |||| || | ||||| | |||| ||| |||||||||||| | ||||| ||||| | | Sbjct 13366542 TTGTTGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTG 13366483 Query 173306 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 173365 | || ||| | | ||||| || ||| | ||||||||| || || || | Sbjct 13366482 CTCGATCTGTTCAATTGTGGCCTTATAATGCAATTTCATTCTCTGGCCCAATTGCTGTTT 13366423 Query 173366 TCACTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCAT 173425 | | | | || || || ||||| ||||| | |||||||||| || || | Sbjct 13366422 TTGTTTCCGTATTCCCGATTTATCCACTGGGGCAATCCGGTTGGTTCTTTGCGCCGAGTT 13366363 Query 173426 TCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 173485 | || || ||||| || ||||| | ||| | ||| | ||||| || || || || | Sbjct 13366362 TTGGCGTAGCAGCGATATTTCGATTCATCCTCTTCTTCCAAGGATTTCATAATTGGACGT 13366303 Query 173486 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCA 173545 |||| |||||||| |||||||| ||||| ||| || |||| | || | ||||| || | Sbjct 13366302 TGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTA 13366243 Query 173546 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTA 173605 ||||||| ||||| ||| | ||||| | | ||| ||| ||| |||| Sbjct 13366242 TTCATGGGGCAACCGTGGAAAACACTCTATTTGAGGAC------------GGTGATGGTA 13366195 Query 173606 AGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTA 173665 ||| | | ||||| | | ||| | || || || | ||||| |||||| | Sbjct 13366194 -----CAA---ATACCTTTC-GCACTTTTAACCCAACTCAAGCTGAAGACACTTATTCAA 13366144 Query 173666 TGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGAT 173725 || | || || || | || ||||| || || |||||| | || ||||| || ||| | | Sbjct 13366143 TGGTCACCGCTAATCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTT 13366084 Query 173726 TTTTACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTA 173785 ||||| ||| | ||| | || ||||| |||| ||| | |||| | || || Sbjct 13366083 GGTTACATTTCTTTATGCTATTTGTACCGGTCACCGGTTTATGGATGAGTGCTATTGGCG 13366024 Query 173786 TCGTAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAG 173845 | || || || || || ||||| || || ||||| || || || || || | |||| Sbjct 13366023 TAGTCGGCCTGGCTCTGAACCTACTTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAG 13365964 Query 173846 CAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 173905 | |||||||| || || |||||||||||||| || ||||| ||| | || | ||||| Sbjct 13365963 CGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACAAGGGTATTC 13365904 Query 173906 GAGCATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGT 173965 | || |||||| || || ||||| || ||||| || | |||| || || || || Sbjct 13365903 GTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTC 13365844 Query 173966 TACCAAGAGGTAACGCACTTTAA 173988 |||| | || ||||| |||||| Sbjct 13365843 AACCACGTGGAAACGCTCTTTAA 13365821 Score = 107 bits (118), Expect = 2e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 173815 TACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTAC 173874 || ||||| || || || || || | ||||| |||||||| || || |||||||||||| Sbjct 13367198 TATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTAC 13367257 Query 173875 ACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACCA 173934 || || ||||| ||| | || || ||||| | || |||||| || || ||||| || Sbjct 13367258 ACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCT 13367317 Query 173935 CATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 ||||| || | |||| || || || || ||||| | || ||||| |||||| Sbjct 13367318 CATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 13367371 >seq10 Length=20731201 Score = 309 bits (342), Expect = 4e-79 Identities = 432/604 (72%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 172203 TGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTCGG 172262 ||| ||||||||||| ||||| |||| || |||||| ||| | | || || | || Sbjct 18975651 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGG 18975710 Query 172263 TCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTT 172322 ||| || |||| |||||||||||| |||| || || ||||| |||||||||||| | Sbjct 18975711 TCAAGGAAGTTTCTTTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGAT 18975770 Query 172323 CGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGG 172382 || ||||| ||||| |||||||| || ||||||| || |||||| ||| ||||| || Sbjct 18975771 TGTATTCCAGGCAGATCATAACATCCTTATGCATCTATTTCACATGTTAGGTGTAGCTGG 18975830 Query 172383 AATGTTTGGAGGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAAT 172442 | || || || || |||| || ||||| ||||| || || || ||| | | || Sbjct 18975831 TGTATTCGGCGGTTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 18975890 Query 172443 CAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGACAAGAAGAAGA 172502 | | || || |||||| ||||| || | || |||| || || ||||| ||||| Sbjct 18975891 CGGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGA 18975950 Query 172503 AACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTC 172562 || || || || || || || || ||||| ||||| || | |||||||| |||||| Sbjct 18975951 GACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 18976010 Query 172563 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATG 172622 ||| |||||||| || | | ||||||||| | || | || ||||| ||| | | || Sbjct 18976011 TTTTAACAACTCTCGATCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTG 18976070 Query 172623 GTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 172682 ||| | || | ||||| |||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 18976071 GTTCATTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCA 18976130 Query 172683 ATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGC 172742 || ||||| || || | || || ||| |||| ||| | | ||| | || Sbjct 18976131 AT---ATGTAGTTGATA--GCCAA-----TTAATACTTGGGCTGATATCATCAACCGTGC 18976180 Query 172743 AAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCATTAGACCTTGC 172802 || || ||||||||||| ||||| ||| | ||||| ||||||||||| ||||||| || Sbjct 18976181 TAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 18976240 Query 172803 TTCT 172806 | || Sbjct 18976241 TGCT 18976244 Score = 147 bits (162), Expect = 3e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 ||||||||||||||||| |||| || || ||||| |||||||||||| | || ||||| Sbjct 9553635 TTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAG 9553576 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGA 172392 |||||||||||||| || |||||||| || |||||| ||| ||||| || | || || Sbjct 9553575 GCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 9553516 Query 172393 GGATCTTTATTCTCAGCAATGCACGGTTCTTTAGTTACATCTTCTCTAATCAGAGAGACA 172452 || || ||||| || ||||| ||||| || || || ||| | | ||||| || || Sbjct 9553515 GGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACC 9553456 Query 172453 ACTGAAGCAGAATC 172466 |||||| ||||| Sbjct 9553455 ACTGAAAACGAATC 9553442 >seq12 Length=23561512 Score = 100 bits (110), Expect = 3e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 172606 CCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAAC 172665 ||||| ||| | | ||||| || || | ||||| |||| ||||| ||||| || ||| Sbjct 9700737 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 9700796 Query 172666 GGTTTCAACTTCAACCAATCAGTTGTAGAT-GCTAACGGTAAGATTGTTCCTACATGGGG 172724 || ||||| |||||| |||| || || ||| || || ||| || || ||| |||| Sbjct 9700797 GGATTCAATTTCAACTAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGC 9700855 Query 172725 TGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAA 172784 ||| | | || | || || || ||||||| ||| || || ||| | ||| | ||||| Sbjct 9700856 TGATATCATCAATCGTGCTAATCTTGGTATGGGAGTAATACACGAACGTAATACTCACAA 9700915 Query 172785 CTTCCCATTAGACCTTGCTTCT 172806 |||||| ||||||| ||| || Sbjct 9700916 CTTCCCTCTAGACCTAGCTGCT 9700937 >seq6 Length=27870862 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 21598636 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 21598577 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | |||||||||||||| Sbjct 21598576 TGGTCCTGGAATGGGTCCTATTGGTGT 21598550 >seq1 Length=39866532 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 27071509 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 27071568 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | |||||||||||||| Sbjct 27071569 TGGTCCTGGAATGGGTCCTATTGGTGT 27071595 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| |||||||| || || || ||| | || ||||||||||| ||||||||||| || || Sbjct 27096270 TGGAGCAGATGTTTGCCACCTTAACCTTCACAAGACATTCTGCATTCCACATGGTGGGGG 27096329 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT 159779 |||||||| | |||||||||||||| Sbjct 27096330 TGGTCCTGGAATGGGTCCTATTGGTGT 27096356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588023135256480